Introduction

Data from RAB : CD8+ T cells from mice

Volcano plot

Getting some stats yay

table(res_tbl$padj<=0.05) # significant genes
## 
## FALSE  TRUE 
## 10762  7486
table(res_tbl$padj<=0.05&res_tbl$log2FoldChange<=-1) # signif and downreg
## 
## FALSE  TRUE 
## 21299  2119
table(res_tbl$padj<=0.05&res_tbl$log2FoldChange>=1) # signif and upreg
## 
## FALSE  TRUE 
## 23240   967

GSEA analysis logFc

Gene ontology

ID setSize enrichmentScore NES pvalue p.adjust qvalue
GOBP_RIBOSOME_BIOGENESIS 188 0.4202304 2.262517 0.0000000 0.0000001 0.0000001
GOBP_NCRNA_PROCESSING 219 0.3982346 2.140165 0.0000000 0.0000001 0.0000001
GOBP_RIBONUCLEOPROTEIN_COMPLEX_BIOGENESIS 243 0.3702549 2.033228 0.0000000 0.0000003 0.0000002
GOBP_NCRNA_METABOLIC_PROCESS 291 0.3330353 1.869525 0.0000000 0.0000027 0.0000025
GOBP_RRNA_METABOLIC_PROCESS 165 0.3546795 1.873524 0.0000006 0.0003758 0.0003423
GOBP_NEGATIVE_REGULATION_OF_MULTICELLULAR_ORGANISMAL_PROCESS 367 -0.4190080 -1.593634 0.0000010 0.0005444 0.0004958
GOBP_SECOND_MESSENGER_MEDIATED_SIGNALING 104 -0.5317041 -1.877538 0.0000030 0.0014366 0.0013084
GOBP_MITOCHONDRIAL_GENE_EXPRESSION 60 0.4937235 2.205917 0.0000051 0.0021201 0.0019310
GOBP_ANATOMICAL_STRUCTURE_FORMATION_INVOLVED_IN_MORPHOGENESIS 424 -0.3978751 -1.518565 0.0000073 0.0026851 0.0024456
GOBP_REGULATION_OF_BLOOD_CIRCULATION 81 -0.5507294 -1.893945 0.0000120 0.0039641 0.0036105
GOBP_NUCLEOSOME_ASSEMBLY 42 -0.6308289 -1.983763 0.0000185 0.0055704 0.0050735
GOBP_CIRCULATORY_SYSTEM_PROCESS 192 -0.4542605 -1.684249 0.0000273 0.0070828 0.0064510
GOBP_CELL_JUNCTION_ORGANIZATION 250 -0.4234105 -1.590739 0.0000278 0.0070828 0.0064510
GOBP_BLOOD_VESSEL_MORPHOGENESIS 234 -0.4274936 -1.602745 0.0000389 0.0092077 0.0083863
GOBP_EPITHELIUM_DEVELOPMENT 396 -0.3905801 -1.488672 0.0000430 0.0094832 0.0086372
GOBP_TUBE_MORPHOGENESIS 327 -0.4078165 -1.545576 0.0000505 0.0100062 0.0091136
GOBP_REGULATION_OF_CELLULAR_COMPONENT_MOVEMENT 415 -0.3873085 -1.477693 0.0000514 0.0100062 0.0091136
GOBP_MITOCHONDRIAL_TRANSLATION 40 0.5425012 2.223763 0.0000764 0.0140421 0.0127895
GOBP_VASCULAR_ENDOTHELIAL_GROWTH_FACTOR_SIGNALING_PATHWAY 12 -0.7962391 -1.928079 0.0000948 0.0160636 0.0146306
GOBP_METAL_ION_TRANSPORT 287 -0.4093355 -1.546197 0.0000971 0.0160636 0.0146306
GOBP_DNA_REPLICATION_DEPENDENT_CHROMATIN_ORGANIZATION 12 -0.7929755 -1.920176 0.0001171 0.0161505 0.0147099
GOBP_CELLULAR_RESPONSE_TO_CORTICOSTEROID_STIMULUS 18 -0.7201209 -1.911504 0.0001123 0.0161505 0.0147099
GOBP_NUCLEOSOME_ORGANIZATION 68 -0.5441418 -1.832523 0.0001058 0.0161505 0.0147099
GOBP_REGULATION_OF_CYTOSOLIC_CALCIUM_ION_CONCENTRATION 108 -0.4916194 -1.742060 0.0001163 0.0161505 0.0147099
GOBP_VASCULATURE_DEVELOPMENT 273 -0.4057025 -1.530667 0.0001222 0.0161831 0.0147395
GOBP_TRNA_METABOLIC_PROCESS 94 0.3826494 1.851779 0.0001406 0.0166234 0.0151405
GOBP_REGULATION_OF_HEART_CONTRACTION 68 -0.5408257 -1.821355 0.0001337 0.0166234 0.0151405
GOBP_HEART_PROCESS 83 -0.5190101 -1.789866 0.0001452 0.0166234 0.0151405
GOBP_REGULATION_OF_SYSTEM_PROCESS 169 -0.4429369 -1.628337 0.0001511 0.0166234 0.0151405
GOBP_REGULATION_OF_ION_TRANSPORT 209 -0.4320044 -1.611367 0.0001557 0.0166234 0.0151405
GOBP_TISSUE_MORPHOGENESIS 224 -0.4202805 -1.572373 0.0001554 0.0166234 0.0151405
GOBP_NEGATIVE_REGULATION_OF_LOCOMOTION 126 -0.4692152 -1.687861 0.0001808 0.0184509 0.0168050
GOBP_TUBE_DEVELOPMENT 395 -0.3777990 -1.439766 0.0001895 0.0184509 0.0168050
GOBP_CIRCULATORY_SYSTEM_DEVELOPMENT 404 -0.3739173 -1.425661 0.0001873 0.0184509 0.0168050
GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY 218 -0.4185485 -1.563937 0.0001968 0.0186101 0.0169500
GOBP_MULTI_MULTICELLULAR_ORGANISM_PROCESS 78 -0.5151214 -1.764197 0.0002062 0.0189635 0.0172719
GOBP_SECONDARY_ALCOHOL_METABOLIC_PROCESS 73 -0.5294475 -1.797978 0.0002358 0.0210972 0.0192152
GOBP_REGULATION_OF_MULTICELLULAR_ORGANISMAL_DEVELOPMENT 500 -0.3658697 -1.400679 0.0002576 0.0224403 0.0204386
GOBP_TRNA_PROCESSING 59 0.4332874 1.930042 0.0002668 0.0226412 0.0206216
GOBP_DIVALENT_INORGANIC_CATION_HOMEOSTASIS 176 -0.4360282 -1.608350 0.0002741 0.0226811 0.0206578
GOBP_RESPONSE_TO_WOUNDING 218 -0.4146453 -1.549352 0.0002937 0.0237143 0.0215989
GOBP_NEGATIVE_REGULATION_OF_CELL_JUNCTION_ASSEMBLY 12 -0.7721924 -1.869851 0.0003058 0.0241009 0.0219510
GOBP_PEPTIDE_ANTIGEN_ASSEMBLY_WITH_MHC_PROTEIN_COMPLEX 10 -0.7995064 -1.850430 0.0003191 0.0244478 0.0222670
GOBP_SYNAPSE_ORGANIZATION 145 -0.4407451 -1.606583 0.0003250 0.0244478 0.0222670
GOBP_NON_MOTILE_CILIUM_ASSEMBLY 27 0.5591436 2.075650 0.0003576 0.0251526 0.0229089
GOBP_PROTEIN_LOCALIZATION_TO_CELL_SURFACE 30 0.5351167 2.036139 0.0003648 0.0251526 0.0229089
GOBP_REGULATION_OF_VASOCONSTRICTION 17 -0.7320425 -1.924947 0.0003637 0.0251526 0.0229089
GOBP_RESPONSE_TO_BACTERIUM 196 -0.4202941 -1.560183 0.0003516 0.0251526 0.0229089
GOBP_EPITHELIAL_CELL_DIFFERENTIATION 212 -0.4160709 -1.552853 0.0003869 0.0261372 0.0238057
GOBP_INFLAMMATORY_RESPONSE 269 -0.3985508 -1.502971 0.0004386 0.0290328 0.0264430
GOBP_POSITIVE_REGULATION_OF_SYNAPTIC_TRANSMISSION 42 -0.5841990 -1.837126 0.0004654 0.0301290 0.0274414
GOBP_POSITIVE_REGULATION_OF_EPITHELIAL_CELL_PROLIFERATION 62 -0.5179816 -1.721081 0.0004733 0.0301290 0.0274414
GOBP_REGULATION_OF_TRANS_SYNAPTIC_SIGNALING 130 -0.4444338 -1.602743 0.0005254 0.0328112 0.0298843
GOBP_REGULATION_OF_HYDROLASE_ACTIVITY 413 -0.3658946 -1.395743 0.0005546 0.0339923 0.0309601
GOBP_AMINO_ACID_ACTIVATION 26 0.5691117 2.091506 0.0005724 0.0344476 0.0313748
GOBP_REGULATION_OF_BLOOD_PRESSURE 51 -0.5560272 -1.800739 0.0006133 0.0362496 0.0330160
GOBP_POSITIVE_CHEMOTAXIS 21 -0.6654548 -1.831806 0.0006533 0.0379392 0.0345549
GOBP_POSITIVE_REGULATION_OF_VASCULATURE_DEVELOPMENT 56 -0.5393640 -1.770717 0.0006891 0.0393287 0.0358204
GOBP_ANTIGEN_PROCESSING_AND_PRESENTATION 55 -0.5290421 -1.732068 0.0007336 0.0404695 0.0368595
GOBP_REGULATION_OF_METAL_ION_TRANSPORT 134 -0.4443028 -1.606388 0.0007264 0.0404695 0.0368595
GOBP_CATION_TRANSPORT 386 -0.3715800 -1.414838 0.0007476 0.0405689 0.0369500
GOBP_ANTIGEN_PROCESSING_AND_PRESENTATION_OF_PEPTIDE_ANTIGEN 32 -0.6078114 -1.819012 0.0007662 0.0407760 0.0371386
GOBP_RNA_MODIFICATION 81 0.3737751 1.768056 0.0007761 0.0407760 0.0371386
GOBP_CELLULAR_RESPONSE_TO_VASCULAR_ENDOTHELIAL_GROWTH_FACTOR_STIMULUS 20 -0.6710952 -1.828484 0.0008721 0.0451026 0.0410793
GOBP_POSITIVE_REGULATION_OF_VASOCONSTRICTION 11 -0.7703247 -1.829313 0.0009319 0.0474542 0.0432211

Reactome

ID setSize enrichmentScore NES pvalue p.adjust qvalue
REACTOME_METABOLISM_OF_RNA 354 0.3181325 1.790770 0.0000000 0.0000001 0.0000001
REACTOME_ERCC6_CSB_AND_EHMT2_G9A_POSITIVELY_REGULATE_RRNA_EXPRESSION 19 -0.8248996 -2.234797 0.0000000 0.0000145 0.0000121
REACTOME_DNA_DAMAGE_TELOMERE_STRESS_INDUCED_SENESCENCE 27 -0.7525998 -2.187419 0.0000002 0.0000387 0.0000324
REACTOME_ACTIVATED_PKN1_STIMULATES_TRANSCRIPTION_OF_AR_ANDROGEN_RECEPTOR_REGULATED_GENES_KLK2_AND_KLK3 17 -0.8218206 -2.175183 0.0000002 0.0000387 0.0000324
REACTOME_PRC2_METHYLATES_HISTONES_AND_DNA 22 -0.7783629 -2.174067 0.0000002 0.0000387 0.0000324
REACTOME_SIRT1_NEGATIVELY_REGULATES_RRNA_EXPRESSION 18 -0.8077241 -2.163898 0.0000004 0.0000412 0.0000344
REACTOME_RRNA_PROCESSING 121 0.4167129 2.125377 0.0000003 0.0000412 0.0000344
REACTOME_ASSEMBLY_OF_THE_ORC_COMPLEX_AT_THE_ORIGIN_OF_REPLICATION 17 -0.8106785 -2.145692 0.0000006 0.0000635 0.0000531
REACTOME_HDACS_DEACETYLATE_HISTONES 20 -0.7848922 -2.148112 0.0000009 0.0000808 0.0000675
REACTOME_GPCR_LIGAND_BINDING 85 -0.5701547 -1.973017 0.0000012 0.0001004 0.0000840
REACTOME_RHO_GTPASES_ACTIVATE_PKNS 32 -0.6900298 -2.070302 0.0000051 0.0003743 0.0003129
REACTOME_RESPONSE_OF_EIF2AK1_HRI_TO_HEME_DEFICIENCY 14 0.7983226 2.450254 0.0000062 0.0004164 0.0003481
REACTOME_PEPTIDE_LIGAND_BINDING_RECEPTORS 32 -0.6855547 -2.056876 0.0000075 0.0004658 0.0003893
REACTOME_DNA_METHYLATION 18 -0.7702184 -2.063420 0.0000082 0.0004758 0.0003977
REACTOME_CONDENSATION_OF_PROPHASE_CHROMOSOMES 23 -0.7373536 -2.078302 0.0000134 0.0007266 0.0006073
REACTOME_RMTS_METHYLATE_HISTONE_ARGININES 30 -0.6846354 -2.030726 0.0000207 0.0009769 0.0008165
REACTOME_HDMS_DEMETHYLATE_HISTONES 18 -0.7574607 -2.029242 0.0000193 0.0009769 0.0008165
REACTOME_CLASS_A_1_RHODOPSIN_LIKE_RECEPTORS 61 -0.5784696 -1.920470 0.0000224 0.0009769 0.0008165
REACTOME_TRANSLATION 150 0.3394148 1.783755 0.0000229 0.0009769 0.0008165
REACTOME_MUSCLE_CONTRACTION 64 -0.5667502 -1.894519 0.0000285 0.0011564 0.0009666
REACTOME_AMYLOID_FIBER_FORMATION 26 -0.6948552 -2.005490 0.0000326 0.0012382 0.0010350
REACTOME_G_ALPHA_I_SIGNALLING_EVENTS 93 -0.5228802 -1.829064 0.0000336 0.0012382 0.0010350
REACTOME_CHEMOKINE_RECEPTORS_BIND_CHEMOKINES 16 -0.7692750 -2.012026 0.0000384 0.0013557 0.0011332
REACTOME_RRNA_MODIFICATION_IN_THE_NUCLEUS_AND_CYTOSOL 42 0.5146336 2.117212 0.0000494 0.0016676 0.0013939
REACTOME_MITOCHONDRIAL_TRANSLATION 47 0.5030006 2.136305 0.0000627 0.0018825 0.0015735
REACTOME_B_WICH_COMPLEX_POSITIVELY_REGULATES_RRNA_EXPRESSION 31 -0.6612151 -1.973243 0.0000649 0.0018825 0.0015735
REACTOME_POSITIVE_EPIGENETIC_REGULATION_OF_RRNA_EXPRESSION 36 -0.6362680 -1.951250 0.0000650 0.0018825 0.0015735
REACTOME_SIGNALING_BY_GPCR 203 -0.4393624 -1.633643 0.0000648 0.0018825 0.0015735
REACTOME_RUNX1_REGULATES_GENES_INVOLVED_IN_MEGAKARYOCYTE_DIFFERENTIATION_AND_PLATELET_FUNCTION 28 -0.6718228 -1.966916 0.0000731 0.0019767 0.0016523
REACTOME_RNA_POLYMERASE_I_PROMOTER_ESCAPE 29 -0.6660953 -1.963595 0.0000727 0.0019767 0.0016523
REACTOME_RECOGNITION_AND_ASSOCIATION_OF_DNA_GLYCOSYLASE_WITH_SITE_CONTAINING_AN_AFFECTED_PURINE 15 -0.7763891 -2.001794 0.0000823 0.0021527 0.0017994
REACTOME_INTEGRIN_CELL_SURFACE_INTERACTIONS 28 -0.6672434 -1.953509 0.0000887 0.0022490 0.0018798
REACTOME_TRANSCRIPTIONAL_REGULATION_BY_SMALL_RNAS 34 -0.6399327 -1.937420 0.0001100 0.0027045 0.0022607
REACTOME_INHIBITION_OF_DNA_RECOMBINATION_AT_TELOMERE 15 -0.7681219 -1.980479 0.0001223 0.0028333 0.0023683
REACTOME_NEGATIVE_EPIGENETIC_REGULATION_OF_RRNA_EXPRESSION 37 -0.6102480 -1.880198 0.0001221 0.0028333 0.0023683
REACTOME_MEIOTIC_RECOMBINATION 27 -0.6678077 -1.940973 0.0001363 0.0030700 0.0025662
REACTOME_HCMV_LATE_EVENTS 41 -0.6030408 -1.886807 0.0001451 0.0031799 0.0026580
REACTOME_RNA_POLYMERASE_I_TRANSCRIPTION 36 -0.6167328 -1.891342 0.0001911 0.0040778 0.0034085
REACTOME_GENE_SILENCING_BY_RNA 48 -0.5831423 -1.871125 0.0002346 0.0048778 0.0040772
REACTOME_TRANSCRIPTIONAL_REGULATION_OF_GRANULOPOIESIS 29 -0.6397653 -1.885976 0.0002679 0.0054326 0.0045410
REACTOME_DISEASES_OF_PROGRAMMED_CELL_DEATH 35 -0.6211771 -1.893189 0.0003365 0.0062022 0.0051843
REACTOME_FORMATION_OF_THE_BETA_CATENIN_TCF_TRANSACTIVATING_COMPLEX 30 -0.6357073 -1.885598 0.0003257 0.0062022 0.0051843
REACTOME_GLUTAMATE_NEUROTRANSMITTER_RELEASE_CYCLE 11 -0.7835626 -1.875487 0.0003243 0.0062022 0.0051843
REACTOME_ESTROGEN_DEPENDENT_GENE_EXPRESSION 50 -0.5619663 -1.815751 0.0003361 0.0062022 0.0051843
REACTOME_ACTIVATION_OF_ANTERIOR_HOX_GENES_IN_HINDBRAIN_DEVELOPMENT_DURING_EARLY_EMBRYOGENESIS 36 -0.6035609 -1.850947 0.0003951 0.0071200 0.0059515
REACTOME_PKMTS_METHYLATE_HISTONE_LYSINES 33 -0.6155661 -1.854636 0.0004474 0.0078871 0.0065926
REACTOME_CHOLESTEROL_BIOSYNTHESIS 20 -0.6912764 -1.891902 0.0004918 0.0084513 0.0070642
REACTOME_OXIDATIVE_STRESS_INDUCED_SENESCENCE 50 -0.5527892 -1.786099 0.0005002 0.0084513 0.0070642
REACTOME_PERK_REGULATES_GENE_EXPRESSION 20 0.6152588 2.108650 0.0005879 0.0097310 0.0081339
REACTOME_BASE_EXCISION_REPAIR_AP_SITE_FORMATION 20 -0.6858669 -1.877097 0.0006064 0.0098359 0.0082215
REACTOME_REGULATION_OF_CHOLESTEROL_BIOSYNTHESIS_BY_SREBP_SREBF 36 -0.5902649 -1.810172 0.0006608 0.0105077 0.0087831
REACTOME_INTERFERON_ALPHA_BETA_SIGNALING 32 -0.6010899 -1.803455 0.0007744 0.0120782 0.0100959
REACTOME_ACTIVATION_OF_GENE_EXPRESSION_BY_SREBF_SREBP 33 -0.5988184 -1.804177 0.0009783 0.0149697 0.0125128
REACTOME_TRANSCRIPTION_OF_THE_HIV_GENOME 30 0.5140065 1.941619 0.0010491 0.0157562 0.0131703
REACTOME_HCMV_EARLY_EVENTS 52 -0.5435194 -1.767743 0.0012862 0.0183634 0.0153495
REACTOME_MEIOSIS 44 -0.5566760 -1.762579 0.0012739 0.0183634 0.0153495
REACTOME_REPRODUCTION 50 -0.5353868 -1.729871 0.0012936 0.0183634 0.0153495
REACTOME_CELLULAR_SENESCENCE 84 -0.4845548 -1.674394 0.0013133 0.0183634 0.0153495
REACTOME_EXTRACELLULAR_MATRIX_ORGANIZATION 101 -0.4656461 -1.642276 0.0013665 0.0187843 0.0157013
REACTOME_DECTIN_1_MEDIATED_NONCANONICAL_NF_KB_SIGNALING 41 0.4483596 1.830044 0.0015701 0.0208744 0.0174484
REACTOME_FORMATION_OF_SENESCENCE_ASSOCIATED_HETEROCHROMATIN_FOCI_SAHF 12 -0.7418583 -1.810833 0.0015531 0.0208744 0.0174484
REACTOME_TRNA_AMINOACYLATION 23 0.5581536 1.986800 0.0016949 0.0218595 0.0182718
REACTOME_ABC_FAMILY_PROTEINS_MEDIATED_TRANSPORT 52 0.4322670 1.873402 0.0016981 0.0218595 0.0182718
REACTOME_HIV_TRANSCRIPTION_INITIATION 22 0.5588907 1.971723 0.0022967 0.0291037 0.0243270
REACTOME_NGF_STIMULATED_TRANSCRIPTION 22 -0.6273514 -1.752272 0.0024905 0.0299532 0.0250371
REACTOME_NONHOMOLOGOUS_END_JOINING_NHEJ 24 -0.6146130 -1.747632 0.0024522 0.0299532 0.0250371
REACTOME_PHASE_I_FUNCTIONALIZATION_OF_COMPOUNDS 26 -0.6040087 -1.743289 0.0025484 0.0299532 0.0250371
REACTOME_SENESCENCE_ASSOCIATED_SECRETORY_PHENOTYPE_SASP 37 -0.5597393 -1.724579 0.0025399 0.0299532 0.0250371
REACTOME_IMMUNOREGULATORY_INTERACTIONS_BETWEEN_A_LYMPHOID_AND_A_NON_LYMPHOID_CELL 38 -0.5549380 -1.716007 0.0025347 0.0299532 0.0250371
REACTOME_TRANSMISSION_ACROSS_CHEMICAL_SYNAPSES 91 -0.4586302 -1.600197 0.0029161 0.0337849 0.0282399
REACTOME_DEFECTIVE_CFTR_CAUSES_CYSTIC_FIBROSIS 40 0.4386227 1.779165 0.0031385 0.0348966 0.0291692
REACTOME_HCMV_INFECTION 67 -0.4899399 -1.645919 0.0031411 0.0348966 0.0291692
REACTOME_ESR_MEDIATED_SIGNALING 82 -0.4714735 -1.624109 0.0030611 0.0348966 0.0291692
REACTOME_DEPOSITION_OF_NEW_CENPA_CONTAINING_NUCLEOSOMES_AT_THE_CENTROMERE 24 -0.6078438 -1.728384 0.0032266 0.0349151 0.0291847
REACTOME_PRE_NOTCH_EXPRESSION_AND_PROCESSING 41 -0.5491890 -1.718314 0.0032289 0.0349151 0.0291847
REACTOME_ABC_TRANSPORTER_DISORDERS 43 0.4301494 1.780849 0.0033251 0.0353239 0.0295264
REACTOME_MRNA_SPLICING 93 0.3208986 1.557679 0.0033538 0.0353239 0.0295264
REACTOME_ATF4_ACTIVATES_GENES_IN_RESPONSE_TO_ENDOPLASMIC_RETICULUM_STRESS 17 0.6043709 1.969259 0.0034389 0.0357555 0.0298872
REACTOME_CELL_CELL_JUNCTION_ORGANIZATION 17 -0.6670013 -1.765410 0.0036462 0.0362784 0.0303242
REACTOME_SWITCHING_OF_ORIGINS_TO_A_POST_REPLICATIVE_STATE 47 0.4047876 1.719183 0.0035756 0.0362784 0.0303242
REACTOME_DOWNSTREAM_SIGNALING_EVENTS_OF_B_CELL_RECEPTOR_BCR 51 0.3967764 1.717372 0.0036149 0.0362784 0.0303242
REACTOME_MEIOTIC_SYNAPSIS 27 -0.5882600 -1.709769 0.0036681 0.0362784 0.0303242
REACTOME_REGULATION_OF_INSULIN_LIKE_GROWTH_FACTOR_IGF_TRANSPORT_AND_UPTAKE_BY_INSULIN_LIKE_GROWTH_FACTOR_BINDING_PROTEINS_IGFBPS 43 -0.5400266 -1.702675 0.0038014 0.0371436 0.0310474
REACTOME_REGULATION_OF_HMOX1_EXPRESSION_AND_ACTIVITY 41 0.4253605 1.736170 0.0042169 0.0407127 0.0340308
REACTOME_ORC1_REMOVAL_FROM_CHROMATIN 38 0.4375405 1.751806 0.0042945 0.0409744 0.0342495
REACTOME_TRANSCRIPTIONAL_REGULATION_BY_VENTX 18 0.5696858 1.893476 0.0047252 0.0435466 0.0363996
REACTOME_HATS_ACETYLATE_HISTONES 57 -0.4971303 -1.636556 0.0046830 0.0435466 0.0363996
REACTOME_EPIGENETIC_REGULATION_OF_GENE_EXPRESSION 60 -0.4898048 -1.622921 0.0046617 0.0435466 0.0363996
REACTOME_O_LINKED_GLYCOSYLATION 26 -0.5833032 -1.683528 0.0048420 0.0436318 0.0364707
REACTOME_CARDIAC_CONDUCTION 38 -0.5431413 -1.679529 0.0048280 0.0436318 0.0364707
REACTOME_REGULATION_OF_PTEN_STABILITY_AND_ACTIVITY 38 0.4325294 1.731743 0.0050413 0.0449289 0.0375549
REACTOME_TRNA_PROCESSING 52 0.4030996 1.746994 0.0052215 0.0450492 0.0376555
REACTOME_DNA_DOUBLE_STRAND_BREAK_RESPONSE 32 -0.5570441 -1.671305 0.0051839 0.0450492 0.0376555
REACTOME_METABOLISM_OF_STEROIDS 62 -0.4851718 -1.613509 0.0052207 0.0450492 0.0376555
REACTOME_MITOTIC_PROPHASE 62 -0.4815711 -1.601535 0.0057882 0.0494131 0.0413032

Wikipathways

ID setSize enrichmentScore NES pvalue p.adjust qvalue
WP_CHOLESTEROL_BIOSYNTHESIS_PATHWAY 15 -0.7699181 -1.974693 0.0000848 0.0234200 0.0221688
WP_CHOLESTEROL_METABOLISM_WITH_BLOCH_AND_KANDUTSCHRUSSELL_PATHWAYS 36 -0.6274836 -1.926183 0.0001180 0.0234200 0.0221688
WP_NRF2ARE_REGULATION 12 0.7253024 2.225841 0.0003877 0.0317013 0.0300076
WP_HIPPO_SIGNALING_REGULATION_PATHWAYS 37 -0.6083571 -1.868926 0.0003036 0.0317013 0.0300076
WP_HIPPOMERLIN_SIGNALING_DYSREGULATION 48 -0.5738623 -1.846478 0.0003993 0.0317013 0.0300076
WP_GENES_RELATED_TO_PRIMARY_CILIUM_DEVELOPMENT_BASED_ON_CRISPR 56 0.4202437 1.922558 0.0007543 0.0455173 0.0430854
WP_NETWORK_MAP_OF_SARSCOV2_SIGNALING_PATHWAY 95 -0.4818131 -1.688382 0.0008026 0.0455173 0.0430854

Perturbations

ID setSize enrichmentScore NES pvalue p.adjust font.size
MARTENS_TRETINOIN_RESPONSE_UP 184 -0.5872224 -2.159815 0.0e+00 0.0000001 0.0000001
MEISSNER_BRAIN_HCP_WITH_H3K4ME3_AND_H3K27ME3 374 -0.5034767 -1.907819 0.0e+00 0.0000001 0.0000001
QI_HYPOXIA 91 -0.5949457 -2.063067 0.0e+00 0.0000144 0.0000123
MEBARKI_HCC_PROGENITOR_FZD8CRD_DN 129 -0.5518763 -1.990844 0.0e+00 0.0000144 0.0000123
MIKKELSEN_MEF_HCP_WITH_H3K27ME3 103 -0.5776911 -2.041288 0.0e+00 0.0000223 0.0000190
ELVIDGE_HIF1A_TARGETS_DN 59 -0.6431329 -2.103057 1.0e-07 0.0000411 0.0000351
TAKEDA_TARGETS_OF_NUP98_HOXA9_FUSION_10D_UP 60 -0.6245174 -2.044445 3.0e-07 0.0000926 0.0000791
GAUSSMANN_MLL_AF4_FUSION_TARGETS_F_DN 13 0.8460883 2.553701 3.0e-07 0.0000935 0.0000799
ELVIDGE_HIF1A_AND_HIF2A_TARGETS_DN 65 -0.6113137 -2.025274 7.0e-07 0.0001710 0.0001461
TAKEDA_TARGETS_OF_NUP98_HOXA9_FUSION_16D_UP 66 -0.6091698 -2.020585 9.0e-07 0.0001851 0.0001581
ELVIDGE_HYPOXIA_UP 95 -0.5558713 -1.936141 1.1e-06 0.0001851 0.0001581
MEISSNER_NPC_HCP_WITH_H3_UNMETHYLATED 170 -0.4946995 -1.811719 9.0e-07 0.0001851 0.0001581
LINDGREN_BLADDER_CANCER_CLUSTER_2B 167 -0.4893748 -1.788294 1.0e-06 0.0001851 0.0001581
BENPORATH_ES_WITH_H3K27ME3 241 -0.4548713 -1.693899 1.1e-06 0.0001851 0.0001581
BLANCO_MELO_RESPIRATORY_SYNCYTIAL_VIRUS_INFECTION_A594_CELLS_UP 122 -0.5267929 -1.890439 1.2e-06 0.0001909 0.0001630

Hallmarks

ID setSize enrichmentScore NES pvalue p.adjust qvalue
HALLMARK_UNFOLDED_PROTEIN_RESPONSE 64 0.4383292 2.004361 0.0001087 0.0047896 0.0036300
HALLMARK_COAGULATION 41 -0.6079492 -1.896209 0.0001916 0.0047896 0.0036300
HALLMARK_KRAS_SIGNALING_DN 48 -0.5567782 -1.776552 0.0005328 0.0066598 0.0050474
HALLMARK_MYOGENESIS 83 -0.5012911 -1.724630 0.0004401 0.0066598 0.0050474
HALLMARK_MYC_TARGETS_V1 111 0.3269211 1.626157 0.0012892 0.0128916 0.0097705
HALLMARK_CHOLESTEROL_HOMEOSTASIS 48 -0.5304719 -1.692615 0.0022801 0.0176641 0.0133876
HALLMARK_ESTROGEN_RESPONSE_EARLY 98 -0.4475800 -1.578372 0.0024730 0.0176641 0.0133876
HALLMARK_ESTROGEN_RESPONSE_LATE 91 -0.4571878 -1.590534 0.0047591 0.0297441 0.0225429
HALLMARK_KRAS_SIGNALING_UP 79 -0.4671946 -1.605742 0.0062644 0.0348024 0.0263766

GSEA analysis pvalue

Gene ontology

Reactome

Wikipathways

Perturbations

Hallmarks

ORA

GOBP

ID GeneRatio p.adjust qvalue
GOBP_STEROL_METABOLIC_PROCESS 48/2195 0.0000846 0.0000754
GOBP_AXON_DEVELOPMENT 108/2195 0.0001624 0.0001448
GOBP_SMALL_GTPASE_MEDIATED_SIGNAL_TRANSDUCTION 111/2195 0.0001624 0.0001448
GOBP_SECONDARY_ALCOHOL_METABOLIC_PROCESS 45/2195 0.0001624 0.0001448
GOBP_STEROL_BIOSYNTHETIC_PROCESS 25/2195 0.0002127 0.0001897
GOBP_MONONUCLEAR_CELL_DIFFERENTIATION 98/2195 0.0002714 0.0002420
GOBP_POSITIVE_REGULATION_OF_CELL_ADHESION 98/2195 0.0005136 0.0004579
GOBP_POSITIVE_REGULATION_OF_LEUKOCYTE_CELL_CELL_ADHESION 59/2195 0.0012264 0.0010935
GOBP_REGULATION_OF_CELL_CELL_ADHESION 97/2195 0.0012264 0.0010935
GOBP_ALCOHOL_METABOLIC_PROCESS 79/2195 0.0012264 0.0010935
GOBP_POSITIVE_REGULATION_OF_CELL_CELL_ADHESION 67/2195 0.0012264 0.0010935
GOBP_CELL_ADHESION_MEDIATED_BY_INTEGRIN 29/2195 0.0012264 0.0010935
GOBP_CELL_ACTIVATION_INVOLVED_IN_IMMUNE_RESPONSE 70/2195 0.0013574 0.0012102
GOBP_VASCULAR_TRANSPORT 29/2195 0.0017692 0.0015774
GOBP_T_CELL_ACTIVATION 103/2195 0.0017908 0.0015966
GOBP_POSITIVE_REGULATION_OF_CYTOKINE_PRODUCTION_INVOLVED_IN_IMMUNE_RESPONSE 25/2195 0.0018220 0.0016245
GOBP_ORGANIC_HYDROXY_COMPOUND_BIOSYNTHETIC_PROCESS 58/2195 0.0024443 0.0021792
GOBP_ANTIGEN_PROCESSING_AND_PRESENTATION 30/2195 0.0025069 0.0022351
GOBP_WOUND_HEALING 91/2195 0.0025209 0.0022476
GOBP_PATTERN_RECOGNITION_RECEPTOR_SIGNALING_PATHWAY 46/2195 0.0041020 0.0036572
GOBP_REGULATION_OF_SMALL_GTPASE_MEDIATED_SIGNAL_TRANSDUCTION 68/2195 0.0041020 0.0036572
GOBP_LEUKOCYTE_CELL_CELL_ADHESION 80/2195 0.0042734 0.0038101
GOBP_RAS_PROTEIN_SIGNAL_TRANSDUCTION 76/2195 0.0043562 0.0038838
GOBP_LEUKOTRIENE_BIOSYNTHETIC_PROCESS 9/2195 0.0092092 0.0082107
GOBP_NEGATIVE_REGULATION_OF_LOCOMOTION 70/2195 0.0092092 0.0082107
GOBP_RESPONSE_TO_METAL_ION 74/2195 0.0092092 0.0082107
GOBP_NEURON_PROJECTION_GUIDANCE 55/2195 0.0112181 0.0100017
GOBP_ANTIGEN_PROCESSING_AND_PRESENTATION_OF_EXOGENOUS_PEPTIDE_ANTIGEN_VIA_MHC_CLASS_II 11/2195 0.0112574 0.0100368
GOBP_AMEBOIDAL_TYPE_CELL_MIGRATION 86/2195 0.0140645 0.0125395
GOBP_CARBOHYDRATE_CATABOLIC_PROCESS 38/2195 0.0140645 0.0125395
GOBP_PHOSPHOLIPID_METABOLIC_PROCESS 80/2195 0.0140645 0.0125395
GOBP_SMOOTH_MUSCLE_CELL_MIGRATION 22/2195 0.0140645 0.0125395
GOBP_CYTOKINE_PRODUCTION_INVOLVED_IN_IMMUNE_RESPONSE 31/2195 0.0140645 0.0125395
GOBP_STEROID_METABOLIC_PROCESS 68/2195 0.0142036 0.0126635
GOBP_SECOND_MESSENGER_MEDIATED_SIGNALING 65/2195 0.0142036 0.0126635
GOBP_CELL_CHEMOTAXIS 65/2195 0.0153341 0.0136714
GOBP_DIVALENT_INORGANIC_CATION_HOMEOSTASIS 98/2195 0.0164616 0.0146767
GOBP_REGULATION_OF_CHEMOTAXIS 50/2195 0.0164616 0.0146767
GOBP_ORGANIC_ACID_BIOSYNTHETIC_PROCESS 65/2195 0.0164616 0.0146767
GOBP_POSITIVE_REGULATION_OF_GLYCOLYTIC_PROCESS 10/2195 0.0164616 0.0146767
GOBP_REGULATION_OF_ANTIGEN_PROCESSING_AND_PRESENTATION 10/2195 0.0164616 0.0146767
GOBP_MYELOID_CELL_DIFFERENTIATION 80/2195 0.0164616 0.0146767
GOBP_REGULATION_OF_ATP_METABOLIC_PROCESS 25/2195 0.0164616 0.0146767
GOBP_REGULATION_OF_T_CELL_ACTIVATION 71/2195 0.0164616 0.0146767
GOBP_REGULATION_OF_PHOSPHOLIPID_BIOSYNTHETIC_PROCESS 9/2195 0.0185701 0.0165566
GOBP_POSITIVE_REGULATION_OF_IMMUNE_EFFECTOR_PROCESS 57/2195 0.0185701 0.0165566
GOBP_ALCOHOL_BIOSYNTHETIC_PROCESS 35/2195 0.0185701 0.0165566
GOBP_REGULATION_OF_INFLAMMATORY_RESPONSE 73/2195 0.0189798 0.0169218
GOBP_BLOOD_VESSEL_ENDOTHELIAL_CELL_MIGRATION 31/2195 0.0192365 0.0171507
GOBP_MAINTENANCE_OF_LOCATION 68/2195 0.0198452 0.0176934
GOBP_CALCIUM_MEDIATED_SIGNALING 46/2195 0.0208734 0.0186101
GOBP_REGULATION_OF_ACTIN_FILAMENT_BASED_PROCESS 79/2195 0.0208734 0.0186101
GOBP_LYMPHOCYTE_ACTIVATION_INVOLVED_IN_IMMUNE_RESPONSE 47/2195 0.0215098 0.0191775
GOBP_INTEGRIN_MEDIATED_SIGNALING_PATHWAY 29/2195 0.0248228 0.0221313
GOBP_MYELOID_LEUKOCYTE_DIFFERENTIATION 48/2195 0.0248228 0.0221313
GOBP_STEROID_BIOSYNTHETIC_PROCESS 41/2195 0.0249771 0.0222689
GOBP_ANTIGEN_PROCESSING_AND_PRESENTATION_OF_EXOGENOUS_PEPTIDE_ANTIGEN 13/2195 0.0249771 0.0222689
GOBP_ACTIN_FILAMENT_ORGANIZATION 88/2195 0.0252925 0.0225501
GOBP_REGULATION_OF_PATTERN_RECOGNITION_RECEPTOR_SIGNALING_PATHWAY 28/2195 0.0274800 0.0245003
GOBP_POSITIVE_REGULATION_OF_LEUKOCYTE_PROLIFERATION 37/2195 0.0283127 0.0252428
GOBP_MONONUCLEAR_CELL_MIGRATION 44/2195 0.0284967 0.0254068
GOBP_ALPHA_BETA_T_CELL_ACTIVATION 38/2195 0.0300062 0.0267527
GOBP_HOMOTYPIC_CELL_CELL_ADHESION 25/2195 0.0304769 0.0271724
GOBP_TEMPERATURE_HOMEOSTASIS 42/2195 0.0304769 0.0271724
GOBP_POSITIVE_REGULATION_OF_CYTOKINE_PRODUCTION 89/2195 0.0304769 0.0271724
GOBP_MATURE_B_CELL_DIFFERENTIATION 13/2195 0.0304769 0.0271724
GOBP_NEURON_APOPTOTIC_PROCESS 52/2195 0.0308275 0.0274849
GOBP_REGULATION_OF_GTPASE_ACTIVITY 70/2195 0.0314716 0.0280591
GOBP_PYRUVATE_METABOLIC_PROCESS 28/2195 0.0330592 0.0294746
GOBP_REGULATION_OF_LEUKOCYTE_MIGRATION 47/2195 0.0330592 0.0294746
GOBP_TOLL_LIKE_RECEPTOR_SIGNALING_PATHWAY 31/2195 0.0344973 0.0307568
GOBP_GAMMA_DELTA_T_CELL_ACTIVATION 9/2195 0.0344973 0.0307568
GOBP_POSITIVE_REGULATION_OF_CELL_PROJECTION_ORGANIZATION 69/2195 0.0344973 0.0307568
GOBP_NEURON_DEATH 71/2195 0.0347478 0.0309801
GOBP_CELLULAR_RESPONSE_TO_CALCIUM_ION 23/2195 0.0358732 0.0319835
GOBP_REGULATION_OF_CELL_ADHESION_MEDIATED_BY_INTEGRIN 16/2195 0.0358732 0.0319835
GOBP_REGULATION_OF_PLATELET_ACTIVATION 16/2195 0.0358732 0.0319835
GOBP_REGULATION_OF_AXONOGENESIS 37/2195 0.0360894 0.0321762
GOBP_RECEPTOR_MEDIATED_ENDOCYTOSIS 53/2195 0.0360894 0.0321762
GOBP_REGULATION_OF_LEUKOCYTE_PROLIFERATION 53/2195 0.0360894 0.0321762
GOBP_B_CELL_DIFFERENTIATION 34/2195 0.0360894 0.0321762
GOBP_SMOOTH_MUSCLE_CELL_PROLIFERATION 34/2195 0.0360894 0.0321762
GOBP_MYELOID_LEUKOCYTE_ACTIVATION 50/2195 0.0392968 0.0350359
GOBP_CELL_SUBSTRATE_ADHESION 72/2195 0.0396550 0.0353553
GOBP_NEGATIVE_REGULATION_OF_LEUKOCYTE_APOPTOTIC_PROCESS 16/2195 0.0415601 0.0370537
GOBP_UNSATURATED_FATTY_ACID_BIOSYNTHETIC_PROCESS 16/2195 0.0415601 0.0370537
GOBP_REGULATION_OF_GENERATION_OF_PRECURSOR_METABOLITES_AND_ENERGY 32/2195 0.0428243 0.0381809
GOBP_REGULATION_OF_IMMUNE_EFFECTOR_PROCESS 73/2195 0.0439075 0.0391466
GOBP_REGULATION_OF_NEURON_PROJECTION_DEVELOPMENT 83/2195 0.0439075 0.0391466
GOBP_REGULATION_OF_CARBOHYDRATE_CATABOLIC_PROCESS 17/2195 0.0439075 0.0391466
GOBP_TISSUE_REMODELING 38/2195 0.0439075 0.0391466
GOBP_REGULATION_OF_GLYCOLYTIC_PROCESS 15/2195 0.0439075 0.0391466
GOBP_NEUTROPHIL_EXTRAVASATION 7/2195 0.0439075 0.0391466
GOBP_PEPTIDE_ANTIGEN_ASSEMBLY_WITH_MHC_PROTEIN_COMPLEX 7/2195 0.0439075 0.0391466
GOBP_REGULATION_OF_NEUROGENESIS 71/2195 0.0439753 0.0392071
GOBP_ANTIGEN_PROCESSING_AND_PRESENTATION_OF_PEPTIDE_OR_POLYSACCHARIDE_ANTIGEN_VIA_MHC_CLASS_II 11/2195 0.0439753 0.0392071
GOBP_LEUKOTRIENE_METABOLIC_PROCESS 11/2195 0.0439753 0.0392071
GOBP_LEUKOCYTE_CHEMOTAXIS 49/2195 0.0439753 0.0392071
GOBP_REGULATION_OF_SMALL_MOLECULE_METABOLIC_PROCESS 66/2195 0.0449920 0.0401135
GOBP_POSITIVE_REGULATION_OF_NUCLEOTIDE_METABOLIC_PROCESS 14/2195 0.0456568 0.0407062
GOBP_POSITIVE_REGULATION_OF_CHEMOKINE_PRODUCTION 20/2195 0.0456568 0.0407062
GOBP_TISSUE_MIGRATION 62/2195 0.0456568 0.0407062
GOBP_T_CELL_DIFFERENTIATION 57/2195 0.0456568 0.0407062
GOBP_ADP_METABOLIC_PROCESS 24/2195 0.0456568 0.0407062
GOBP_CARBOHYDRATE_TRANSPORT 35/2195 0.0458426 0.0408720
GOBP_ANTIGEN_PROCESSING_AND_PRESENTATION_OF_PEPTIDE_ANTIGEN 17/2195 0.0470266 0.0419275
GOBP_NEGATIVE_REGULATION_OF_TOLL_LIKE_RECEPTOR_SIGNALING_PATHWAY 13/2195 0.0480022 0.0427973
GOBP_ERK1_AND_ERK2_CASCADE 64/2195 0.0480266 0.0428191
GOBP_NONRIBOSOMAL_PEPTIDE_BIOSYNTHETIC_PROCESS 8/2195 0.0495090 0.0441408
GOBP_POSITIVE_REGULATION_OF_TYPE_2_IMMUNE_RESPONSE 8/2195 0.0495090 0.0441408
## [1] 110   9

Reactome

ID GeneRatio p.adjust qvalue
REACTOME_ACTIVATION_OF_GENE_EXPRESSION_BY_SREBF_SREBP 21/1466 0.0001203 0.0001137
REACTOME_CHOLESTEROL_BIOSYNTHESIS 15/1466 0.0001238 0.0001170
REACTOME_REGULATION_OF_CHOLESTEROL_BIOSYNTHESIS_BY_SREBP_SREBF 22/1466 0.0020032 0.0018932
REACTOME_EXTRACELLULAR_MATRIX_ORGANIZATION 71/1466 0.0151756 0.0143421
REACTOME_RESPONSE_OF_EIF2AK1_HRI_TO_HEME_DEFICIENCY 9/1466 0.0151756 0.0143421
REACTOME_LAMININ_INTERACTIONS 13/1466 0.0269626 0.0254817
REACTOME_RHO_GTPASE_CYCLE 92/1466 0.0380360 0.0359469
REACTOME_CDC42_GTPASE_CYCLE 39/1466 0.0380360 0.0359469
## [1] 8 9

Specific pathways signatures

The oxphos signature

Highlight on the volcano plot of the genes found to be implicated in oxphos + table

gene log2FoldChange padj description
1700066M21Rik 0.7760122 0.0000357 RIKEN cDNA 1700066M21 gene [Source:MGI Symbol;Acc:MGI:1920717]
Ak4 -1.0934896 0.0000000 adenylate kinase 4 [Source:MGI Symbol;Acc:MGI:87979]
Atp5pb 0.3489896 0.0164320 ATP synthase peripheral stalk-membrane subunit b [Source:MGI Symbol;Acc:MGI:1100495]
Atpsckmt 0.7738770 0.0001397 ATP synthase C subunit lysine N-methyltransferase [Source:MGI Symbol;Acc:MGI:1915323]
Bid 0.9662152 0.0000000 BH3 interacting domain death agonist [Source:MGI Symbol;Acc:MGI:108093]
Ccnb1 -0.5864787 0.0000052 cyclin B1 [Source:MGI Symbol;Acc:MGI:88302]
Cdk1 -1.1516056 0.0000000 cyclin-dependent kinase 1 [Source:MGI Symbol;Acc:MGI:88351]
Chchd10 2.1496037 0.0000000 coiled-coil-helix-coiled-coil-helix domain containing 10 [Source:MGI Symbol;Acc:MGI:2143558]
Coa6 0.6399467 0.0033147 cytochrome c oxidase assembly factor 6 [Source:MGI Symbol;Acc:MGI:1915142]
Coq9 0.5637524 0.0000185 coenzyme Q9 [Source:MGI Symbol;Acc:MGI:1915164]
Cox4i1 -0.3426376 0.0249665 cytochrome c oxidase subunit 4I1 [Source:MGI Symbol;Acc:MGI:88473]
Cox4i2 -3.8917569 0.0002489 cytochrome c oxidase subunit 4I2 [Source:MGI Symbol;Acc:MGI:2135755]
Cox5a -0.3174744 0.0291051 cytochrome c oxidase subunit 5A [Source:MGI Symbol;Acc:MGI:88474]
Cox6a2 5.3257345 0.0000000 cytochrome c oxidase subunit 6A2 [Source:MGI Symbol;Acc:MGI:104649]
Cox7a1 -1.4141922 0.0041042 cytochrome c oxidase subunit 7A1 [Source:MGI Symbol;Acc:MGI:1316714]
Cox7a2 -0.9244949 0.0000000 cytochrome c oxidase subunit 7A2 [Source:MGI Symbol;Acc:MGI:1316715]
Cox7a2l 0.3600131 0.0036882 cytochrome c oxidase subunit 7A2 like [Source:MGI Symbol;Acc:MGI:106015]
Cox7b -0.3257134 0.0196115 cytochrome c oxidase subunit 7B [Source:MGI Symbol;Acc:MGI:1913392]
Cox8a -0.4335115 0.0011514 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
Cyc1 0.5325911 0.0006311 cytochrome c-1 [Source:MGI Symbol;Acc:MGI:1913695]
Dld 0.8010380 0.0000000 dihydrolipoamide dehydrogenase [Source:MGI Symbol;Acc:MGI:107450]
Dnajc15 1.4008090 0.0000000 DnaJ heat shock protein family (Hsp40) member C15 [Source:MGI Symbol;Acc:MGI:1913398]
Fxn 0.5279482 0.0052317 frataxin [Source:MGI Symbol;Acc:MGI:1096879]
Macroh2a1 -0.7760994 0.0000000 macroH2A.1 histone [Source:MGI Symbol;Acc:MGI:1349392]
Mlxipl -4.8379245 0.0002656 MLX interacting protein-like [Source:MGI Symbol;Acc:MGI:1927999]
Msh2 0.3360493 0.0162811 mutS homolog 2 [Source:MGI Symbol;Acc:MGI:101816]
mt-Cytb 0.7362155 0.0000633 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
Mtch2 -0.4261732 0.0011588 mitochondrial carrier 2 [Source:MGI Symbol;Acc:MGI:1929260]
Ndufa13 -0.7426656 0.0000002 NADH:ubiquinone oxidoreductase subunit A13 [Source:MGI Symbol;Acc:MGI:1914434]
Ndufa2 0.6702846 0.0000311 NADH:ubiquinone oxidoreductase subunit A2 [Source:MGI Symbol;Acc:MGI:1343103]
Ndufb8 -0.6653651 0.0003593 NADH:ubiquinone oxidoreductase subunit B8 [Source:MGI Symbol;Acc:MGI:1914514]
Ndufc1 0.3598763 0.0464003 NADH:ubiquinone oxidoreductase subunit C1 [Source:MGI Symbol;Acc:MGI:1913627]
Ndufs1 0.4069742 0.0159663 NADH:ubiquinone oxidoreductase core subunit S1 [Source:MGI Symbol;Acc:MGI:2443241]
Ndufs3 0.4565267 0.0014823 NADH:ubiquinone oxidoreductase core subunit S3 [Source:MGI Symbol;Acc:MGI:1915599]
Ndufs5 0.4404621 0.0413439 NADH:ubiquinone oxidoreductase core subunit S5 [Source:MGI Symbol;Acc:MGI:1890889]
Ndufs8 0.3486683 0.0427632 NADH:ubiquinone oxidoreductase core subunit S8 [Source:MGI Symbol;Acc:MGI:2385079]
Ndufv1 0.5371159 0.0003021 NADH:ubiquinone oxidoreductase core subunit V1 [Source:MGI Symbol;Acc:MGI:107851]
Ndufv2 0.3756694 0.0119498 NADH:ubiquinone oxidoreductase core subunit V2 [Source:MGI Symbol;Acc:MGI:1920150]
Ndufv3 -0.4057194 0.0010873 NADH:ubiquinone oxidoreductase core subunit V3 [Source:MGI Symbol;Acc:MGI:1890894]
Nupr1 3.8610012 0.0000000 nuclear protein transcription regulator 1 [Source:MGI Symbol;Acc:MGI:1891834]
Rhoa 0.4320101 0.0002089 ras homolog family member A [Source:MGI Symbol;Acc:MGI:1096342]
Sdhaf2 0.5211079 0.0011438 succinate dehydrogenase complex assembly factor 2 [Source:MGI Symbol;Acc:MGI:1913322]
Sdhd -0.4140277 0.0050897 succinate dehydrogenase complex, subunit D, integral membrane protein [Source:MGI Symbol;Acc:MGI:1914175]
Shmt2 1.3728711 0.0000000 serine hydroxymethyltransferase 2 (mitochondrial) [Source:MGI Symbol;Acc:MGI:1277989]
Slc25a23 -1.0869440 0.0000001 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:MGI Symbol;Acc:MGI:1914222]
Slc25a33 1.2239753 0.0000000 solute carrier family 25, member 33 [Source:MGI Symbol;Acc:MGI:1917806]
Tefm 0.9472543 0.0000004 transcription elongation factor, mitochondrial [Source:MGI Symbol;Acc:MGI:1915800]
Tnf -0.4493040 0.0213785 tumor necrosis factor [Source:MGI Symbol;Acc:MGI:104798]
Uqcc3 0.7342383 0.0000025 ubiquinol-cytochrome c reductase complex assembly factor 3 [Source:MGI Symbol;Acc:MGI:2147553]
Uqcrb -0.4465303 0.0141058 ubiquinol-cytochrome c reductase binding protein [Source:MGI Symbol;Acc:MGI:1914780]
Uqcrc1 0.4425436 0.0041157 ubiquinol-cytochrome c reductase core protein 1 [Source:MGI Symbol;Acc:MGI:107876]
Uqcrc2 0.2780693 0.0391466 ubiquinol cytochrome c reductase core protein 2 [Source:MGI Symbol;Acc:MGI:1914253]
Uqcrfs1 -0.3677989 0.0136283 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 [Source:MGI Symbol;Acc:MGI:1913944]
Uqcrh -1.9810039 0.0000000 ubiquinol-cytochrome c reductase hinge protein [Source:MGI Symbol;Acc:MGI:1913826]
Uqcrq 0.8912318 0.0000000 ubiquinol-cytochrome c reductase, complex III subunit VII [Source:MGI Symbol;Acc:MGI:107807]

GSEA on filtered terms from GO, Reactome, Hallmark

The glycolytic process

Highlight on the volcano plot of the genes found to be implicated in oxphos + table

gene log2FoldChange padj description
Adpgk 0.4734952 0.0064508 ADP-dependent glucokinase [Source:MGI Symbol;Acc:MGI:1919391]
Aldoa -0.4299506 0.0005551 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
Aldoc -3.1681380 0.0000000 aldolase C, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:101863]
App 1.8053584 0.0001617 amyloid beta (A4) precursor protein [Source:MGI Symbol;Acc:MGI:88059]
Arl2 -0.3653505 0.0411939 ADP-ribosylation factor-like 2 [Source:MGI Symbol;Acc:MGI:1928393]
Cbfa2t3 -3.2411697 0.0005968 CBFA2/RUNX1 translocation partner 3 [Source:MGI Symbol;Acc:MGI:1338013]
Eif6 0.9322629 0.0000000 eukaryotic translation initiation factor 6 [Source:MGI Symbol;Acc:MGI:1196288]
Eno1 -0.4581882 0.0014000 enolase 1, alpha non-neuron [Source:MGI Symbol;Acc:MGI:95393]
Eno2 -1.7183873 0.0000000 enolase 2, gamma neuronal [Source:MGI Symbol;Acc:MGI:95394]
Gale -1.9234365 0.0000000 galactose-4-epimerase, UDP [Source:MGI Symbol;Acc:MGI:1921496]
Galk1 -1.0579932 0.0000000 galactokinase 1 [Source:MGI Symbol;Acc:MGI:95730]
Galt -0.7824535 0.0011648 galactose-1-phosphate uridyl transferase [Source:MGI Symbol;Acc:MGI:95638]
Gapdh -0.7202681 0.0000002 glyceraldehyde-3-phosphate dehydrogenase [Source:MGI Symbol;Acc:MGI:95640]
Gapdhs -1.0049733 0.0393871 glyceraldehyde-3-phosphate dehydrogenase, spermatogenic [Source:MGI Symbol;Acc:MGI:95653]
Gck -1.7298814 0.0000667 glucokinase [Source:MGI Symbol;Acc:MGI:1270854]
Git1 0.3975993 0.0047473 GIT ArfGAP 1 [Source:MGI Symbol;Acc:MGI:1927140]
Gpi1 -0.5333862 0.0000448 glucose-6-phosphate isomerase 1 [Source:MGI Symbol;Acc:MGI:95797]
Hdac4 1.1816743 0.0000000 histone deacetylase 4 [Source:MGI Symbol;Acc:MGI:3036234]
Hif1a 1.2951858 0.0000000 hypoxia inducible factor 1, alpha subunit [Source:MGI Symbol;Acc:MGI:106918]
Hk1 -1.0348814 0.0000000 hexokinase 1 [Source:MGI Symbol;Acc:MGI:96103]
Htr2a -2.3294748 0.0008212 5-hydroxytryptamine (serotonin) receptor 2A [Source:MGI Symbol;Acc:MGI:109521]
Ier3 -1.5559821 0.0000000 immediate early response 3 [Source:MGI Symbol;Acc:MGI:104814]
Kat2b 0.4168947 0.0129814 K(lysine) acetyltransferase 2B [Source:MGI Symbol;Acc:MGI:1343094]
Khk -1.1221658 0.0000000 ketohexokinase [Source:MGI Symbol;Acc:MGI:1096353]
Mlxipl -4.8379245 0.0002656 MLX interacting protein-like [Source:MGI Symbol;Acc:MGI:1927999]
Mtch2 -0.4261732 0.0011588 mitochondrial carrier 2 [Source:MGI Symbol;Acc:MGI:1929260]
Nupr1 3.8610012 0.0000000 nuclear protein transcription regulator 1 [Source:MGI Symbol;Acc:MGI:1891834]
Ogt 0.4383453 0.0331243 O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) [Source:MGI Symbol;Acc:MGI:1339639]
P2rx7 -1.4185347 0.0000448 purinergic receptor P2X, ligand-gated ion channel, 7 [Source:MGI Symbol;Acc:MGI:1339957]
Pfkl -0.6810711 0.0000036 phosphofructokinase, liver, B-type [Source:MGI Symbol;Acc:MGI:97547]
Pfkm -1.5673261 0.0000000 phosphofructokinase, muscle [Source:MGI Symbol;Acc:MGI:97548]
Pfkp -0.9396597 0.0000000 phosphofructokinase, platelet [Source:MGI Symbol;Acc:MGI:1891833]
Pgam1 -0.7307644 0.0000004 phosphoglycerate mutase 1 [Source:MGI Symbol;Acc:MGI:97552]
Pgk1 -1.2025366 0.0000000 phosphoglycerate kinase 1 [Source:MGI Symbol;Acc:MGI:97555]
Pkm -0.8019957 0.0000000 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
Ppp2ca 0.3506315 0.0015177 protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform [Source:MGI Symbol;Acc:MGI:1321159]
Prkaa1 0.3856019 0.0070116 protein kinase, AMP-activated, alpha 1 catalytic subunit [Source:MGI Symbol;Acc:MGI:2145955]
Prkaa2 3.1369277 0.0057674 protein kinase, AMP-activated, alpha 2 catalytic subunit [Source:MGI Symbol;Acc:MGI:1336173]
Prxl2c 1.4490349 0.0000000 peroxiredoxin like 2C [Source:MGI Symbol;Acc:MGI:1913379]
Psen1 0.3163659 0.0109842 presenilin 1 [Source:MGI Symbol;Acc:MGI:1202717]
Slc2a6 -1.9669537 0.0000000 solute carrier family 2 (facilitated glucose transporter), member 6 [Source:MGI Symbol;Acc:MGI:2443286]
Slc4a4 -2.3285759 0.0291506 solute carrier family 4 (anion exchanger), member 4 [Source:MGI Symbol;Acc:MGI:1927555]
Stat3 -0.6213473 0.0000185 signal transducer and activator of transcription 3 [Source:MGI Symbol;Acc:MGI:103038]
Tigar 0.7190222 0.0000239 Trp53 induced glycolysis regulatory phosphatase [Source:MGI Symbol;Acc:MGI:2442752]
Tpi1 -0.3508434 0.0478321 triosephosphate isomerase 1 [Source:MGI Symbol;Acc:MGI:98797]
Ucp2 -0.8738500 0.0000000 uncoupling protein 2 (mitochondrial, proton carrier) [Source:MGI Symbol;Acc:MGI:109354]
Zbtb7a 0.5138323 0.0000137 zinc finger and BTB domain containing 7a [Source:MGI Symbol;Acc:MGI:1335091]

GSEA on filtered terms from GO, Reactome, Hallmark

## 
## FALSE  TRUE 
##  6802   170

ID Description setSize enrichmentScore NES pvalue p.adjust qvalue rank
HALLMARK_GLYCOLYSIS HALLMARK_GLYCOLYSIS 114 -0.3851379 -1.37242 0.0369721 0.1478884 0.116754 2150

ORA

## 
## FALSE  TRUE 
##  2629    78

ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
GOBP_POSITIVE_REGULATION_OF_GLYCOLYTIC_PROCESS GOBP_POSITIVE_REGULATION_OF_GLYCOLYTIC_PROCESS 10/78 20/300 0.0150301 0.1052109 0.0949271 Prxl2c/Entpd5/Hif1a/P2rx7/App/Mlxipl/Htr2a/Prkaa2/Slc4a4/Gapdhs 10

The myc signature

Highlight on the volcano plot of the genes found to be implicated in oxphos + table

gene log2FoldChange padj description
Emp1 -3.1496687 0.0000000 epithelial membrane protein 1 [Source:MGI Symbol;Acc:MGI:107941]
Tgm1 -3.1877557 0.0000000 transglutaminase 1, K polypeptide [Source:MGI Symbol;Acc:MGI:98730]
Acss2 -3.0618636 0.0000000 acyl-CoA synthetase short-chain family member 2 [Source:MGI Symbol;Acc:MGI:1890410]
Mettl1 1.9270748 0.0000000 methyltransferase like 1 [Source:MGI Symbol;Acc:MGI:1339986]
Sord -1.9141737 0.0000000 sorbitol dehydrogenase [Source:MGI Symbol;Acc:MGI:98266]
Ptrh2 1.8232091 0.0000000 peptidyl-tRNA hydrolase 2 [Source:MGI Symbol;Acc:MGI:2444848]
Farsb 1.4337968 0.0000000 phenylalanyl-tRNA synthetase, beta subunit [Source:MGI Symbol;Acc:MGI:1346035]
Pfkm -1.5673261 0.0000000 phosphofructokinase, muscle [Source:MGI Symbol;Acc:MGI:97548]
Atp2b4 -1.5445844 0.0000000 ATPase, Ca++ transporting, plasma membrane 4 [Source:MGI Symbol;Acc:MGI:88111]
Fgf11 -3.9699044 0.0000000 fibroblast growth factor 11 [Source:MGI Symbol;Acc:MGI:109167]
Ciart 1.6318635 0.0000000 circadian associated repressor of transcription [Source:MGI Symbol;Acc:MGI:2684975]
Ddx10 1.0083366 0.0000000 DEAD box helicase 10 [Source:MGI Symbol;Acc:MGI:1924841]
Taf4b 1.2505871 0.0000000 TATA-box binding protein associated factor 4b [Source:MGI Symbol;Acc:MGI:2152345]
Wdr74 1.2594859 0.0000000 WD repeat domain 74 [Source:MGI Symbol;Acc:MGI:2147427]
Als2cl -1.1652979 0.0000000 ALS2 C-terminal like [Source:MGI Symbol;Acc:MGI:2447532]
Smtn -2.4962998 0.0000000 smoothelin [Source:MGI Symbol;Acc:MGI:1354727]
Sorl1 -1.6069430 0.0000000 sortilin-related receptor, LDLR class A repeats-containing [Source:MGI Symbol;Acc:MGI:1202296]
Nop2 1.1273069 0.0000000 NOP2 nucleolar protein [Source:MGI Symbol;Acc:MGI:107891]
Plekhg2 -1.0967184 0.0000000 pleckstrin homology domain containing, family G (with RhoGef domain) member 2 [Source:MGI Symbol;Acc:MGI:2141874]
Tmem97 -1.1491966 0.0000000 transmembrane protein 97 [Source:MGI Symbol;Acc:MGI:1916321]
Ubiad1 1.1222497 0.0000000 UbiA prenyltransferase domain containing 1 [Source:MGI Symbol;Acc:MGI:1918957]
Ddx28 1.0327054 0.0000000 DEAD box helicase 28 [Source:MGI Symbol;Acc:MGI:1919236]
Tcof1 0.8170795 0.0000000 treacle ribosome biogenesis factor 1 [Source:MGI Symbol;Acc:MGI:892003]
Utp20 1.1358903 0.0000000 UTP20 small subunit processome component [Source:MGI Symbol;Acc:MGI:1917933]
Mknk1 0.9474897 0.0000000 MAP kinase-interacting serine/threonine kinase 1 [Source:MGI Symbol;Acc:MGI:894316]
Wsb1 -0.8583915 0.0000000 WD repeat and SOCS box-containing 1 [Source:MGI Symbol;Acc:MGI:1926139]
Lsg1 0.8869362 0.0000000 large 60S subunit nuclear export GTPase 1 [Source:MGI Symbol;Acc:MGI:107236]
Cflar -1.0475096 0.0000000 CASP8 and FADD-like apoptosis regulator [Source:MGI Symbol;Acc:MGI:1336166]
Erbb3 -1.1937641 0.0000000 erb-b2 receptor tyrosine kinase 3 [Source:MGI Symbol;Acc:MGI:95411]
Ddah2 -2.2902351 0.0000000 dimethylarginine dimethylaminohydrolase 2 [Source:MGI Symbol;Acc:MGI:1859016]
Flnb -1.1993260 0.0000000 filamin, beta [Source:MGI Symbol;Acc:MGI:2446089]
Dkc1 1.0018518 0.0000000 dyskeratosis congenita 1, dyskerin [Source:MGI Symbol;Acc:MGI:1861727]
Imp4 0.8661539 0.0000000 IMP4, U3 small nucleolar ribonucleoprotein [Source:MGI Symbol;Acc:MGI:106572]
Mybbp1a 0.9816541 0.0000000 MYB binding protein (P160) 1a [Source:MGI Symbol;Acc:MGI:106181]
Ipo4 0.9677200 0.0000000 importin 4 [Source:MGI Symbol;Acc:MGI:1923001]
Vmp1 0.8496348 0.0000000 vacuole membrane protein 1 [Source:MGI Symbol;Acc:MGI:1923159]
Gpatch4 1.1174249 0.0000000 G patch domain containing 4 [Source:MGI Symbol;Acc:MGI:1913864]
Ncl 0.6644353 0.0000000 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
Bid 0.9662152 0.0000000 BH3 interacting domain death agonist [Source:MGI Symbol;Acc:MGI:108093]
Srm 0.9779976 0.0000000 spermidine synthase [Source:MGI Symbol;Acc:MGI:102690]
Ypel3 0.9931970 0.0000000 yippee like 3 [Source:MGI Symbol;Acc:MGI:1913340]
Mical1 -0.8236975 0.0000000 microtubule associated monooxygenase, calponin and LIM domain containing 1 [Source:MGI Symbol;Acc:MGI:2385847]
Runx1 -1.5466996 0.0000000 runt related transcription factor 1 [Source:MGI Symbol;Acc:MGI:99852]
Flad1 0.8404286 0.0000000 flavin adenine dinucleotide synthetase 1 [Source:MGI Symbol;Acc:MGI:2443030]
Hspd1 0.8461482 0.0000000 heat shock protein 1 (chaperonin) [Source:MGI Symbol;Acc:MGI:96242]
Xpo5 0.8717351 0.0000001 exportin 5 [Source:MGI Symbol;Acc:MGI:1913789]
Pmm2 0.7122271 0.0000002 phosphomannomutase 2 [Source:MGI Symbol;Acc:MGI:1859214]
Fam168a -0.7068709 0.0000002 family with sequence similarity 168, member A [Source:MGI Symbol;Acc:MGI:2442372]
Scfd2 0.9042615 0.0000003 Sec1 family domain containing 2 [Source:MGI Symbol;Acc:MGI:2443446]
Dusp22 -0.9814901 0.0000006 dual specificity phosphatase 22 [Source:MGI Symbol;Acc:MGI:1915926]
Nop56 0.7841447 0.0000008 NOP56 ribonucleoprotein [Source:MGI Symbol;Acc:MGI:1914384]
Prr5 -1.3905581 0.0000008 proline rich 5 (renal) [Source:MGI Symbol;Acc:MGI:1924714]
Ssh3 -1.0015832 0.0000012 slingshot protein phosphatase 3 [Source:MGI Symbol;Acc:MGI:2683546]
Rcl1 0.7953739 0.0000012 RNA terminal phosphate cyclase-like 1 [Source:MGI Symbol;Acc:MGI:1913275]
Paics -0.6409491 0.0000013 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
Utp25 0.7150993 0.0000033 UTP25 small subunit processome component [Source:MGI Symbol;Acc:MGI:2138080]
Nfkb2 0.5904101 0.0000054 nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100 [Source:MGI Symbol;Acc:MGI:1099800]
Fam193b -0.6538335 0.0000099 family with sequence similarity 193, member B [Source:MGI Symbol;Acc:MGI:2385851]
Lamc2 -2.2687475 0.0000149 laminin, gamma 2 [Source:MGI Symbol;Acc:MGI:99913]
Gnl3 0.5592179 0.0000165 guanine nucleotide binding protein-like 3 (nucleolar) [Source:MGI Symbol;Acc:MGI:1353651]
Utp4 0.5820015 0.0000185 UTP4 small subunit processome component [Source:MGI Symbol;Acc:MGI:1096573]
Trmt1 0.5719820 0.0000211 tRNA methyltransferase 1 [Source:MGI Symbol;Acc:MGI:1289155]
Ccng2 -1.9899729 0.0000247 cyclin G2 [Source:MGI Symbol;Acc:MGI:1095734]
Dhrs1 -0.6301070 0.0000479 dehydrogenase/reductase (SDR family) member 1 [Source:MGI Symbol;Acc:MGI:1196314]
Ercc1 0.6552681 0.0000599 excision repair cross-complementing rodent repair deficiency, complementation group 1 [Source:MGI Symbol;Acc:MGI:95412]
Nolc1 0.6601334 0.0000738 nucleolar and coiled-body phosphoprotein 1 [Source:MGI Symbol;Acc:MGI:1918019]
Ccdc86 0.7820110 0.0000763 coiled-coil domain containing 86 [Source:MGI Symbol;Acc:MGI:1277220]
Ddx18 0.5674005 0.0001048 DEAD box helicase 18 [Source:MGI Symbol;Acc:MGI:1914192]
Dcaf4 -0.6967061 0.0001116 DDB1 and CUL4 associated factor 4 [Source:MGI Symbol;Acc:MGI:1921078]
Sfxn4 1.2115653 0.0001527 sideroflexin 4 [Source:MGI Symbol;Acc:MGI:2137680]
Nol6 0.6223380 0.0001594 nucleolar protein family 6 (RNA-associated) [Source:MGI Symbol;Acc:MGI:2140151]
Kics2 0.6794121 0.0001657 KICSTOR subunit 2 [Source:MGI Symbol;Acc:MGI:2670984]
Supv3l1 0.6353839 0.0001949 suppressor of var1, 3-like 1 (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2441711]
Slc12a8 1.0020921 0.0002131 solute carrier family 12 (potassium/chloride transporters), member 8 [Source:MGI Symbol;Acc:MGI:2443672]
Nop16 0.6407413 0.0002536 NOP16 nucleolar protein [Source:MGI Symbol;Acc:MGI:107862]
Dgka -0.4601907 0.0003354 diacylglycerol kinase, alpha [Source:MGI Symbol;Acc:MGI:102952]
Rhbdf1 -1.9726761 0.0004753 rhomboid 5 homolog 1 [Source:MGI Symbol;Acc:MGI:104328]
Bend3 0.7571042 0.0011079 BEN domain containing 3 [Source:MGI Symbol;Acc:MGI:2677212]
Eef1akmt4 1.1661329 0.0015900 EEF1A lysine methyltransferase 4 [Source:MGI Symbol;Acc:MGI:5903914]
Mtmr11 -2.1352633 0.0019487 myotubularin related protein 11 [Source:MGI Symbol;Acc:MGI:2652817]
Ltbp2 -4.3506142 0.0026454 latent transforming growth factor beta binding protein 2 [Source:MGI Symbol;Acc:MGI:99502]
Triobp -0.3819363 0.0027221 TRIO and F-actin binding protein [Source:MGI Symbol;Acc:MGI:1349410]
Rpp40 0.8519141 0.0034443 ribonuclease P 40 subunit [Source:MGI Symbol;Acc:MGI:1346084]
Ahnak 0.5162983 0.0048042 AHNAK nucleoprotein (desmoyokin) [Source:MGI Symbol;Acc:MGI:1316648]
Atic 0.3783632 0.0066502 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase [Source:MGI Symbol;Acc:MGI:1351352]
Plau -1.8899868 0.0072663 plasminogen activator, urokinase [Source:MGI Symbol;Acc:MGI:97611]
Hspa1a -4.0590855 0.0074547 heat shock protein 1A [Source:MGI Symbol;Acc:MGI:96244]
Smurf1 0.4244919 0.0127536 SMAD specific E3 ubiquitin protein ligase 1 [Source:MGI Symbol;Acc:MGI:1923038]
Dph1 0.4987930 0.0168050 diphthamide biosynthesis 1 [Source:MGI Symbol;Acc:MGI:2151233]
Rabepk -0.4345660 0.0176667 Rab9 effector protein with kelch motifs [Source:MGI Symbol;Acc:MGI:2139530]
Gprc5a -1.4963526 0.0181858 G protein-coupled receptor, family C, group 5, member A [Source:MGI Symbol;Acc:MGI:1891250]
Tuba1a -0.4114319 0.0202142 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
Dusp2 -0.9407257 0.0458130 dual specificity phosphatase 2 [Source:MGI Symbol;Acc:MGI:101911]
Cgn -4.0659168 0.0460173 cingulin [Source:MGI Symbol;Acc:MGI:1927237]

Pattern search in data

Slcxxx transporters

gene log2FoldChange padj description
Slc10a3 1.3272526 0.0000000 solute carrier family 10 (sodium/bile acid cotransporter family), member 3 [Source:MGI Symbol;Acc:MGI:95048]
Slc10a7 0.7727925 0.0000001 solute carrier family 10 (sodium/bile acid cotransporter family), member 7 [Source:MGI Symbol;Acc:MGI:1924025]
Slc11a2 -0.6558965 0.0000020 solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2 [Source:MGI Symbol;Acc:MGI:1345279]
Slc12a2 0.5855368 0.0000146 solute carrier family 12, member 2 [Source:MGI Symbol;Acc:MGI:101924]
Slc12a6 -0.3439601 0.0375410 solute carrier family 12, member 6 [Source:MGI Symbol;Acc:MGI:2135960]
Slc12a7 -0.6772575 0.0005605 solute carrier family 12, member 7 [Source:MGI Symbol;Acc:MGI:1342283]
Slc12a8 1.0020921 0.0002131 solute carrier family 12 (potassium/chloride transporters), member 8 [Source:MGI Symbol;Acc:MGI:2443672]
Slc12a9 -0.4272017 0.0408831 solute carrier family 12 (potassium/chloride transporters), member 9 [Source:MGI Symbol;Acc:MGI:1933532]
Slc13a3 -2.8606764 0.0099823 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 [Source:MGI Symbol;Acc:MGI:2149635]
Slc14a1 -4.3711331 0.0000000 solute carrier family 14 (urea transporter), member 1 [Source:MGI Symbol;Acc:MGI:1351654]
Slc15a1 -5.0940528 0.0000000 solute carrier family 15 (oligopeptide transporter), member 1 [Source:MGI Symbol;Acc:MGI:1861376]
Slc15a2 -1.3998787 0.0328805 solute carrier family 15 (H+/peptide transporter), member 2 [Source:MGI Symbol;Acc:MGI:1890457]
Slc15a3 -1.5699401 0.0000056 solute carrier family 15, member 3 [Source:MGI Symbol;Acc:MGI:1929691]
Slc16a1 0.3437910 0.0276993 solute carrier family 16 (monocarboxylic acid transporters), member 1 [Source:MGI Symbol;Acc:MGI:106013]
Slc16a3 -1.3104331 0.0000000 solute carrier family 16 (monocarboxylic acid transporters), member 3 [Source:MGI Symbol;Acc:MGI:1933438]
Slc16a4 -1.4371569 0.0353102 solute carrier family 16 (monocarboxylic acid transporters), member 4 [Source:MGI Symbol;Acc:MGI:2385183]
Slc17a7 -0.8332790 0.0360313 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 [Source:MGI Symbol;Acc:MGI:1920211]
Slc17a8 -1.1445038 0.0282709 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8 [Source:MGI Symbol;Acc:MGI:3039629]
Slc17a9 -0.7838368 0.0000016 solute carrier family 17, member 9 [Source:MGI Symbol;Acc:MGI:1919107]
Slc1a1 -5.3009735 0.0086272 solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 [Source:MGI Symbol;Acc:MGI:105083]
Slc1a2 -2.6430983 0.0000000 solute carrier family 1 (glial high affinity glutamate transporter), member 2 [Source:MGI Symbol;Acc:MGI:101931]
Slc1a4 2.5220787 0.0000000 solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 [Source:MGI Symbol;Acc:MGI:2135601]
Slc1a5 0.7101692 0.0000000 solute carrier family 1 (neutral amino acid transporter), member 5 [Source:MGI Symbol;Acc:MGI:105305]
Slc20a1 0.4063330 0.0090301 solute carrier family 20, member 1 [Source:MGI Symbol;Acc:MGI:108392]
Slc22a15 -0.8605500 0.0004438 solute carrier family 22 (organic anion/cation transporter), member 15 [Source:MGI Symbol;Acc:MGI:3607704]
Slc22a17 -2.0544400 0.0000007 solute carrier family 22 (organic cation transporter), member 17 [Source:MGI Symbol;Acc:MGI:1926225]
Slc23a2 0.3585350 0.0102129 solute carrier family 23 (nucleobase transporters), member 2 [Source:MGI Symbol;Acc:MGI:1859682]
Slc24a3 1.4249301 0.0000038 solute carrier family 24 (sodium/potassium/calcium exchanger), member 3 [Source:MGI Symbol;Acc:MGI:2137513]
Slc24a5 -1.8358563 0.0126162 solute carrier family 24, member 5 [Source:MGI Symbol;Acc:MGI:2677271]
Slc25a1 -1.7655179 0.0000000 solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1 [Source:MGI Symbol;Acc:MGI:1345283]
Slc25a10 -1.2352295 0.0000000 solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10 [Source:MGI Symbol;Acc:MGI:1353497]
Slc25a12 0.6561441 0.0000005 solute carrier family 25 (mitochondrial carrier, Aralar), member 12 [Source:MGI Symbol;Acc:MGI:1926080]
Slc25a13 -0.8343217 0.0001822 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13 [Source:MGI Symbol;Acc:MGI:1354721]
Slc25a15 0.8503196 0.0000000 solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15 [Source:MGI Symbol;Acc:MGI:1342274]
Slc25a16 0.5000528 0.0034495 solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16 [Source:MGI Symbol;Acc:MGI:1920382]
Slc25a20 0.7237088 0.0000004 solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20 [Source:MGI Symbol;Acc:MGI:1928738]
Slc25a22 0.5410579 0.0000736 solute carrier family 25 (mitochondrial carrier, glutamate), member 22 [Source:MGI Symbol;Acc:MGI:1915517]
Slc25a23 -1.0869440 0.0000001 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:MGI Symbol;Acc:MGI:1914222]
Slc25a24 0.6281013 0.0000007 solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24 [Source:MGI Symbol;Acc:MGI:1917160]
Slc25a26 0.9033687 0.0005920 solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26 [Source:MGI Symbol;Acc:MGI:1914832]
Slc25a28 -0.4140519 0.0495053 solute carrier family 25, member 28 [Source:MGI Symbol;Acc:MGI:2180509]
Slc25a29 -1.2110655 0.0365723 solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29 [Source:MGI Symbol;Acc:MGI:2444911]
Slc25a30 -0.6798868 0.0000723 solute carrier family 25, member 30 [Source:MGI Symbol;Acc:MGI:1914804]
Slc25a33 1.2239753 0.0000000 solute carrier family 25, member 33 [Source:MGI Symbol;Acc:MGI:1917806]
Slc25a38 0.5173423 0.0078595 solute carrier family 25, member 38 [Source:MGI Symbol;Acc:MGI:2384782]
Slc25a4 -0.6332772 0.0000000 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 [Source:MGI Symbol;Acc:MGI:1353495]
Slc25a40 0.3419097 0.0131815 solute carrier family 25, member 40 [Source:MGI Symbol;Acc:MGI:2442486]
Slc25a44 0.6043962 0.0000891 solute carrier family 25, member 44 [Source:MGI Symbol;Acc:MGI:2444391]
Slc25a46 0.3301174 0.0087313 solute carrier family 25, member 46 [Source:MGI Symbol;Acc:MGI:1914703]
Slc25a5 -1.5226570 0.0000000 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 [Source:MGI Symbol;Acc:MGI:1353496]
Slc25a51 1.0789570 0.0000000 solute carrier family 25, member 51 [Source:MGI Symbol;Acc:MGI:2684984]
Slc26a11 -1.4136626 0.0000000 solute carrier family 26, member 11 [Source:MGI Symbol;Acc:MGI:2444589]
Slc27a1 -1.4445309 0.0000000 solute carrier family 27 (fatty acid transporter), member 1 [Source:MGI Symbol;Acc:MGI:1347098]
Slc27a6 -4.5237778 0.0012570 solute carrier family 27 (fatty acid transporter), member 6 [Source:MGI Symbol;Acc:MGI:3036230]
Slc28a2 -0.7962408 0.0000223 solute carrier family 28 (sodium-coupled nucleoside transporter), member 2 [Source:MGI Symbol;Acc:MGI:1913105]
Slc28a2b -2.7291844 0.0000000 solute carrier family 28 member 2b [Source:MGI Symbol;Acc:MGI:3702173]
Slc29a1 0.3180878 0.0240215 solute carrier family 29 (nucleoside transporters), member 1 [Source:MGI Symbol;Acc:MGI:1927073]
Slc29a3 0.7076904 0.0000347 solute carrier family 29 (nucleoside transporters), member 3 [Source:MGI Symbol;Acc:MGI:1918529]
Slc29a4 -2.6092781 0.0000345 solute carrier family 29 (nucleoside transporters), member 4 [Source:MGI Symbol;Acc:MGI:2385330]
Slc2a1 -0.3243542 0.0275535 solute carrier family 2 (facilitated glucose transporter), member 1 [Source:MGI Symbol;Acc:MGI:95755]
Slc2a2 2.7218764 0.0483250 solute carrier family 2 (facilitated glucose transporter), member 2 [Source:MGI Symbol;Acc:MGI:1095438]
Slc2a3 -2.6399868 0.0000000 solute carrier family 2 (facilitated glucose transporter), member 3 [Source:MGI Symbol;Acc:MGI:95757]
Slc2a4 -2.8985075 0.0168390 solute carrier family 2 (facilitated glucose transporter), member 4 [Source:MGI Symbol;Acc:MGI:95758]
Slc2a4rg-ps -0.7404864 0.0021495 Slc2a4 regulator, pseudogene [Source:MGI Symbol;Acc:MGI:3651388]
Slc2a5 5.2883022 0.0007654 solute carrier family 2 (facilitated glucose transporter), member 5 [Source:MGI Symbol;Acc:MGI:1928369]
Slc2a6 -1.9669537 0.0000000 solute carrier family 2 (facilitated glucose transporter), member 6 [Source:MGI Symbol;Acc:MGI:2443286]
Slc2a8 -1.0449811 0.0000012 solute carrier family 2, (facilitated glucose transporter), member 8 [Source:MGI Symbol;Acc:MGI:1860103]
Slc2a9 -1.1445865 0.0000000 solute carrier family 2 (facilitated glucose transporter), member 9 [Source:MGI Symbol;Acc:MGI:2152844]
Slc30a2 -1.0093378 0.0000036 solute carrier family 30 (zinc transporter), member 2 [Source:MGI Symbol;Acc:MGI:106637]
Slc30a6 0.5191305 0.0041348 solute carrier family 30 (zinc transporter), member 6 [Source:MGI Symbol;Acc:MGI:2386741]
Slc30a7 -0.7340821 0.0000000 solute carrier family 30 (zinc transporter), member 7 [Source:MGI Symbol;Acc:MGI:1913750]
Slc30a9 -0.4707012 0.0001905 solute carrier family 30 (zinc transporter), member 9 [Source:MGI Symbol;Acc:MGI:1923690]
Slc31a1 -1.1448185 0.0000000 solute carrier family 31, member 1 [Source:MGI Symbol;Acc:MGI:1333843]
Slc35a1 0.4272772 0.0129488 solute carrier family 35 (CMP-sialic acid transporter), member 1 [Source:MGI Symbol;Acc:MGI:1345622]
Slc35a2 -0.6966878 0.0000002 solute carrier family 35 (UDP-galactose transporter), member A2 [Source:MGI Symbol;Acc:MGI:1345297]
Slc35a4 0.4463924 0.0098637 solute carrier family 35, member A4 [Source:MGI Symbol;Acc:MGI:1915093]
Slc35b1 0.6316125 0.0018720 solute carrier family 35, member B1 [Source:MGI Symbol;Acc:MGI:1343133]
Slc35b2 -0.8838625 0.0000000 solute carrier family 35, member B2 [Source:MGI Symbol;Acc:MGI:1921086]
Slc35b3 1.1375800 0.0000000 solute carrier family 35, member B3 [Source:MGI Symbol;Acc:MGI:1913978]
Slc35b4 0.5985159 0.0000286 solute carrier family 35, member B4 [Source:MGI Symbol;Acc:MGI:1931249]
Slc35c1 -0.4993699 0.0002621 solute carrier family 35, member C1 [Source:MGI Symbol;Acc:MGI:2443301]
Slc35d2 1.0787948 0.0000000 solute carrier family 35, member D2 [Source:MGI Symbol;Acc:MGI:1917734]
Slc35d3 -1.4882762 0.0000000 solute carrier family 35, member D3 [Source:MGI Symbol;Acc:MGI:1923407]
Slc35e3 0.8042712 0.0001124 solute carrier family 35, member E3 [Source:MGI Symbol;Acc:MGI:2448489]
Slc35e4 -0.6756747 0.0386563 solute carrier family 35, member E4 [Source:MGI Symbol;Acc:MGI:2144150]
Slc35f5 -0.7192395 0.0024784 solute carrier family 35, member F5 [Source:MGI Symbol;Acc:MGI:1921400]
Slc36a1 -0.3922563 0.0326994 solute carrier family 36 (proton/amino acid symporter), member 1 [Source:MGI Symbol;Acc:MGI:2445299]
Slc36a3os -1.5510091 0.0000947 solute carrier family 36 (proton/amino acid symporter), member 3, opposite strand [Source:MGI Symbol;Acc:MGI:3651340]
Slc37a1 -0.6521863 0.0003524 solute carrier family 37 (glycerol-3-phosphate transporter), member 1 [Source:MGI Symbol;Acc:MGI:2446181]
Slc37a2 -0.8157979 0.0054171 solute carrier family 37 (glycerol-3-phosphate transporter), member 2 [Source:MGI Symbol;Acc:MGI:1929693]
Slc37a3 -0.8580720 0.0000986 solute carrier family 37 (glycerol-3-phosphate transporter), member 3 [Source:MGI Symbol;Acc:MGI:1919394]
Slc37a4 -1.2924409 0.0000000 solute carrier family 37 (glucose-6-phosphate transporter), member 4 [Source:MGI Symbol;Acc:MGI:1316650]
Slc38a1 1.0784495 0.0000000 solute carrier family 38, member 1 [Source:MGI Symbol;Acc:MGI:2145895]
Slc38a11 -4.7785962 0.0058363 solute carrier family 38, member 11 [Source:MGI Symbol;Acc:MGI:2443383]
Slc38a2 0.6309382 0.0006392 solute carrier family 38, member 2 [Source:MGI Symbol;Acc:MGI:1915010]
Slc38a3 -5.5447002 0.0012732 solute carrier family 38, member 3 [Source:MGI Symbol;Acc:MGI:1923507]
Slc38a7 2.2145401 0.0000000 solute carrier family 38, member 7 [Source:MGI Symbol;Acc:MGI:2679005]
Slc39a10 -2.3493697 0.0000000 solute carrier family 39 (zinc transporter), member 10 [Source:MGI Symbol;Acc:MGI:1914515]
Slc39a11 0.4641243 0.0027936 solute carrier family 39 (metal ion transporter), member 11 [Source:MGI Symbol;Acc:MGI:1917056]
Slc39a14 -0.4908269 0.0014061 solute carrier family 39 (zinc transporter), member 14 [Source:MGI Symbol;Acc:MGI:2384851]
Slc39a3 1.5500267 0.0000000 solute carrier family 39 (zinc transporter), member 3 [Source:MGI Symbol;Acc:MGI:2147269]
Slc39a8 -0.3905488 0.0236311 solute carrier family 39 (metal ion transporter), member 8 [Source:MGI Symbol;Acc:MGI:1914797]
Slc39a9 0.7565966 0.0000000 solute carrier family 39 (zinc transporter), member 9 [Source:MGI Symbol;Acc:MGI:1914820]
Slc3a2 1.6270692 0.0000000 solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2 [Source:MGI Symbol;Acc:MGI:96955]
Slc41a1 -0.5531261 0.0006171 solute carrier family 41, member 1 [Source:MGI Symbol;Acc:MGI:2444823]
Slc41a2 -1.9954949 0.0000000 solute carrier family 41, member 2 [Source:MGI Symbol;Acc:MGI:2442940]
Slc43a3 2.0310270 0.0000000 solute carrier family 43, member 3 [Source:MGI Symbol;Acc:MGI:1931054]
Slc48a1 0.6597327 0.0000934 solute carrier family 48 (heme transporter), member 1 [Source:MGI Symbol;Acc:MGI:1914989]
Slc4a1ap 0.3745562 0.0106459 solute carrier family 4 (anion exchanger), member 1, adaptor protein [Source:MGI Symbol;Acc:MGI:1196608]
Slc4a2 0.7002426 0.0000004 solute carrier family 4 (anion exchanger), member 2 [Source:MGI Symbol;Acc:MGI:109351]
Slc4a4 -2.3285759 0.0291506 solute carrier family 4 (anion exchanger), member 4 [Source:MGI Symbol;Acc:MGI:1927555]
Slc4a5 -2.8233783 0.0012507 solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:MGI Symbol;Acc:MGI:2443220]
Slc4a7 -1.4953647 0.0000000 solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:MGI Symbol;Acc:MGI:2443878]
Slc4a8 -1.9058995 0.0000000 solute carrier family 4 (anion exchanger), member 8 [Source:MGI Symbol;Acc:MGI:1928745]
Slc52a2 0.8794775 0.0000001 solute carrier protein 52, member 2 [Source:MGI Symbol;Acc:MGI:1289288]
Slc52a3 -0.6952197 0.0000792 solute carrier protein family 52, member 3 [Source:MGI Symbol;Acc:MGI:1916948]
Slc5a11 -2.6957867 0.0040635 solute carrier family 5 (sodium/glucose cotransporter), member 11 [Source:MGI Symbol;Acc:MGI:1919316]
Slc5a3 -1.5676192 0.0000000 solute carrier family 5 (inositol transporters), member 3 [Source:MGI Symbol;Acc:MGI:1858226]
Slc66a2 -0.8418121 0.0000387 solute carrier family 66 member 2 [Source:MGI Symbol;Acc:MGI:1914193]
Slc6a19 -2.6083929 0.0000000 solute carrier family 6 (neurotransmitter transporter), member 19 [Source:MGI Symbol;Acc:MGI:1921588]
Slc6a9 3.3901792 0.0000000 solute carrier family 6 (neurotransmitter transporter, glycine), member 9 [Source:MGI Symbol;Acc:MGI:95760]
Slc7a1 1.5639238 0.0000000 solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 [Source:MGI Symbol;Acc:MGI:88117]
Slc7a11 4.5421075 0.0000000 solute carrier family 7 (cationic amino acid transporter, y+ system), member 11 [Source:MGI Symbol;Acc:MGI:1347355]
Slc7a3 3.0344226 0.0000000 solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 [Source:MGI Symbol;Acc:MGI:1100521]
Slc7a4 -1.0605721 0.0078851 solute carrier family 7 (cationic amino acid transporter, y+ system), member 4 [Source:MGI Symbol;Acc:MGI:2146512]
Slc7a5 1.7007402 0.0000000 solute carrier family 7 (cationic amino acid transporter, y+ system), member 5 [Source:MGI Symbol;Acc:MGI:1298205]
Slc7a6os 0.3525473 0.0140697 solute carrier family 7, member 6 opposite strand [Source:MGI Symbol;Acc:MGI:1916951]
Slc8a2 -4.5904212 0.0401056 solute carrier family 8 (sodium/calcium exchanger), member 2 [Source:MGI Symbol;Acc:MGI:107996]
Slc8b1 -1.0110415 0.0000018 solute carrier family 8 (sodium/lithium/calcium exchanger), member B1 [Source:MGI Symbol;Acc:MGI:2180781]
Slc9a3r2 -1.8434473 0.0023648 solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2 [Source:MGI Symbol;Acc:MGI:1890662]
Slc9a5 -2.3085685 0.0000000 solute carrier family 9 (sodium/hydrogen exchanger), member 5 [Source:MGI Symbol;Acc:MGI:2685542]
Slc9a6 0.4050384 0.0140882 solute carrier family 9 (sodium/hydrogen exchanger), member 6 [Source:MGI Symbol;Acc:MGI:2443511]
Slc9a9 0.6823560 0.0006338 solute carrier family 9 (sodium/hydrogen exchanger), member 9 [Source:MGI Symbol;Acc:MGI:2679732]
Slco3a1 -0.7747586 0.0000000 solute carrier organic anion transporter family, member 3a1 [Source:MGI Symbol;Acc:MGI:1351867]
Slco5a1 -4.1539351 0.0266312 solute carrier organic anion transporter family, member 5A1 [Source:MGI Symbol;Acc:MGI:2443431]

Mitochondria mention in gene description

gene log2FoldChange padj description
Acaa2 -0.9551231 0.0000000 acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) [Source:MGI Symbol;Acc:MGI:1098623]
Aco2 0.4359586 0.0050425 aconitase 2, mitochondrial [Source:MGI Symbol;Acc:MGI:87880]
Aifm1 -0.7501800 0.0000004 apoptosis-inducing factor, mitochondrion-associated 1 [Source:MGI Symbol;Acc:MGI:1349419]
Aifm2 -0.5455704 0.0144775 apoptosis-inducing factor, mitochondrion-associated 2 [Source:MGI Symbol;Acc:MGI:1918611]
Aldh2 -0.6246235 0.0000217 aldehyde dehydrogenase 2, mitochondrial [Source:MGI Symbol;Acc:MGI:99600]
Atp5a1 0.3593452 0.0126667 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 [Source:MGI Symbol;Acc:MGI:88115]
Atp5b 0.4444880 0.0054968 ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit [Source:MGI Symbol;Acc:MGI:107801]
Atp5c1 -0.4730395 0.0005534 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 [Source:MGI Symbol;Acc:MGI:1261437]
Atp5g1 1.1148189 0.0000000 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9) [Source:MGI Symbol;Acc:MGI:107653]
Atp5g3 -0.3607325 0.0272852 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
Atp5k -0.9091723 0.0000114 ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E [Source:MGI Symbol;Acc:MGI:106636]
Atpaf1 0.5203139 0.0036255 ATP synthase mitochondrial F1 complex assembly factor 1 [Source:MGI Symbol;Acc:MGI:2180560]
Bcat2 0.6473152 0.0000005 branched chain aminotransferase 2, mitochondrial [Source:MGI Symbol;Acc:MGI:1276534]
Car5b -2.7340286 0.0000000 carbonic anhydrase 5b, mitochondrial [Source:MGI Symbol;Acc:MGI:1926249]
Ckmt1 -0.6523058 0.0213253 creatine kinase, mitochondrial 1, ubiquitous [Source:MGI Symbol;Acc:MGI:99441]
Clic4 1.6169240 0.0000000 chloride intracellular channel 4 (mitochondrial) [Source:MGI Symbol;Acc:MGI:1352754]
Clpp 0.5385684 0.0004474 caseinolytic mitochondrial matrix peptidase proteolytic subunit [Source:MGI Symbol;Acc:MGI:1858213]
Clpx 0.4341872 0.0003626 caseinolytic mitochondrial matrix peptidase chaperone subunit [Source:MGI Symbol;Acc:MGI:1346017]
Cluh 0.5110198 0.0004831 clustered mitochondria (cluA/CLU1) homolog [Source:MGI Symbol;Acc:MGI:1921398]
Cmc1 -0.5322571 0.0015204 COX assembly mitochondrial protein 1 [Source:MGI Symbol;Acc:MGI:1915149]
Decr1 0.6682613 0.0000014 2,4-dienoyl CoA reductase 1, mitochondrial [Source:MGI Symbol;Acc:MGI:1914710]
Ears2 1.3691260 0.0000000 glutamyl-tRNA synthetase 2, mitochondrial [Source:MGI Symbol;Acc:MGI:1914667]
Echs1 0.4182121 0.0019499 enoyl Coenzyme A hydratase, short chain, 1, mitochondrial [Source:MGI Symbol;Acc:MGI:2136460]
Gfm1 0.4416229 0.0009390 G elongation factor, mitochondrial 1 [Source:MGI Symbol;Acc:MGI:107339]
Gfm2 0.4445604 0.0006467 G elongation factor, mitochondrial 2 [Source:MGI Symbol;Acc:MGI:2444783]
Gls2 -2.1391724 0.0000000 glutaminase 2 (liver, mitochondrial) [Source:MGI Symbol;Acc:MGI:2143539]
Gpd2 -0.6027938 0.0000003 glycerol phosphate dehydrogenase 2, mitochondrial [Source:MGI Symbol;Acc:MGI:99778]
Grpel1 0.6597476 0.0001300 GrpE-like 1, mitochondrial [Source:MGI Symbol;Acc:MGI:1334417]
Grpel2 0.9869394 0.0000000 GrpE-like 2, mitochondrial [Source:MGI Symbol;Acc:MGI:1334416]
Iars2 0.4132887 0.0022574 isoleucine-tRNA synthetase 2, mitochondrial [Source:MGI Symbol;Acc:MGI:1919586]
Idh2 -0.4465370 0.0014368 isocitrate dehydrogenase 2 (NADP+), mitochondrial [Source:MGI Symbol;Acc:MGI:96414]
Immp1l 0.4814687 0.0275931 IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1913791]
Immt 0.4775035 0.0003439 inner membrane protein, mitochondrial [Source:MGI Symbol;Acc:MGI:1923864]
Lonp1 0.9611996 0.0000000 lon peptidase 1, mitochondrial [Source:MGI Symbol;Acc:MGI:1921392]
Mars2 -0.3451218 0.0387289 methionine-tRNA synthetase 2 (mitochondrial) [Source:MGI Symbol;Acc:MGI:2444136]
Mcat 0.6167150 0.0005216 malonyl CoA:ACP acyltransferase (mitochondrial) [Source:MGI Symbol;Acc:MGI:2388651]
Mcu 0.7142379 0.0000023 mitochondrial calcium uniporter [Source:MGI Symbol;Acc:MGI:3026965]
Mcur1 0.4425286 0.0095945 mitochondrial calcium uniporter regulator 1 [Source:MGI Symbol;Acc:MGI:1923387]
Me2 -1.2753266 0.0000000 malic enzyme 2, NAD(+)-dependent, mitochondrial [Source:MGI Symbol;Acc:MGI:2147351]
Mecr 0.7923092 0.0000649 mitochondrial trans-2-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1349441]
Metap1d 1.0750737 0.0000000 methionyl aminopeptidase type 1D (mitochondrial) [Source:MGI Symbol;Acc:MGI:1913809]
Mgarp -2.5608898 0.0000000 mitochondria localized glutamic acid rich protein [Source:MGI Symbol;Acc:MGI:1914999]
Micos13 0.5347154 0.0031850 mitochondrial contact site and cristae organizing system subunit 13 [Source:MGI Symbol;Acc:MGI:2442174]
Micu2 0.4872478 0.0001788 mitochondrial calcium uptake 2 [Source:MGI Symbol;Acc:MGI:1915764]
Mief1 0.4013588 0.0022555 mitochondrial elongation factor 1 [Source:MGI Symbol;Acc:MGI:2146020]
Mief2 0.6982455 0.0000230 mitochondrial elongation factor 2 [Source:MGI Symbol;Acc:MGI:2144199]
Mpc1 0.8262940 0.0000569 mitochondrial pyruvate carrier 1 [Source:MGI Symbol;Acc:MGI:1915240]
Mpc2 0.9851654 0.0000000 mitochondrial pyruvate carrier 2 [Source:MGI Symbol;Acc:MGI:1917706]
Mpv17 0.5133903 0.0299904 MpV17 mitochondrial inner membrane protein [Source:MGI Symbol;Acc:MGI:97138]
Mrm2 0.7854998 0.0040564 mitochondrial rRNA methyltransferase 2 [Source:MGI Symbol;Acc:MGI:1915267]
Mrm3 1.6108031 0.0000000 mitochondrial rRNA methyltransferase 3 [Source:MGI Symbol;Acc:MGI:1914640]
Mrpl1 0.6516791 0.0000063 mitochondrial ribosomal protein L1 [Source:MGI Symbol;Acc:MGI:2137202]
Mrpl12 0.5801012 0.0003907 mitochondrial ribosomal protein L12 [Source:MGI Symbol;Acc:MGI:1926273]
Mrpl13 0.4694678 0.0278946 mitochondrial ribosomal protein L13 [Source:MGI Symbol;Acc:MGI:2137218]
Mrpl15 0.5538012 0.0001601 mitochondrial ribosomal protein L15 [Source:MGI Symbol;Acc:MGI:1351639]
Mrpl16 0.7127472 0.0000045 mitochondrial ribosomal protein L16 [Source:MGI Symbol;Acc:MGI:2137219]
Mrpl20 1.1426471 0.0000005 mitochondrial ribosomal protein L20 [Source:MGI Symbol;Acc:MGI:2137221]
Mrpl22 0.3729122 0.0387289 mitochondrial ribosomal protein L22 [Source:MGI Symbol;Acc:MGI:1333794]
Mrpl24 0.8988928 0.0000000 mitochondrial ribosomal protein L24 [Source:MGI Symbol;Acc:MGI:1914957]
Mrpl32 0.3670363 0.0389341 mitochondrial ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:2137226]
Mrpl34 0.4381507 0.0108217 mitochondrial ribosomal protein L34 [Source:MGI Symbol;Acc:MGI:2137227]
Mrpl35 1.1910160 0.0000000 mitochondrial ribosomal protein L35 [Source:MGI Symbol;Acc:MGI:1913473]
Mrpl37 0.4867745 0.0010938 mitochondrial ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1926268]
Mrpl38 0.5103793 0.0006597 mitochondrial ribosomal protein L38 [Source:MGI Symbol;Acc:MGI:1926269]
Mrpl39 0.7582155 0.0000000 mitochondrial ribosomal protein L39 [Source:MGI Symbol;Acc:MGI:1351620]
Mrpl44 0.5468557 0.0010572 mitochondrial ribosomal protein L44 [Source:MGI Symbol;Acc:MGI:1916413]
Mrpl46 0.9301607 0.0000036 mitochondrial ribosomal protein L46 [Source:MGI Symbol;Acc:MGI:1914558]
Mrpl49 0.8486033 0.0000000 mitochondrial ribosomal protein L49 [Source:MGI Symbol;Acc:MGI:108180]
Mrpl51 0.8120511 0.0000027 mitochondrial ribosomal protein L51 [Source:MGI Symbol;Acc:MGI:1913743]
Mrpl52 0.9345527 0.0000001 mitochondrial ribosomal protein L52 [Source:MGI Symbol;Acc:MGI:1916086]
Mrpl55 0.9146226 0.0000121 mitochondrial ribosomal protein L55 [Source:MGI Symbol;Acc:MGI:1914462]
Mrpl57 0.4814018 0.0017609 mitochondrial ribosomal protein L57 [Source:MGI Symbol;Acc:MGI:1915090]
Mrpl58 0.8839499 0.0000000 mitochondrial ribosomal protein L58 [Source:MGI Symbol;Acc:MGI:1915822]
Mrps10 0.3934038 0.0357250 mitochondrial ribosomal protein S10 [Source:MGI Symbol;Acc:MGI:1928139]
Mrps14 0.9155799 0.0000001 mitochondrial ribosomal protein S14 [Source:MGI Symbol;Acc:MGI:1928141]
Mrps17 0.7082269 0.0000003 mitochondrial ribosomal protein S17 [Source:MGI Symbol;Acc:MGI:1913508]
Mrps18a 0.7074740 0.0000104 mitochondrial ribosomal protein S18A [Source:MGI Symbol;Acc:MGI:1915815]
Mrps18b 0.8604917 0.0000003 mitochondrial ribosomal protein S18B [Source:MGI Symbol;Acc:MGI:1914223]
Mrps18c 0.6130606 0.0248621 mitochondrial ribosomal protein S18C [Source:MGI Symbol;Acc:MGI:1915985]
Mrps2 0.9638881 0.0000000 mitochondrial ribosomal protein S2 [Source:MGI Symbol;Acc:MGI:2153089]
Mrps22 0.9308891 0.0000001 mitochondrial ribosomal protein S22 [Source:MGI Symbol;Acc:MGI:1928137]
Mrps24 0.4392034 0.0134288 mitochondrial ribosomal protein S24 [Source:MGI Symbol;Acc:MGI:1928142]
Mrps26 0.5754311 0.0001584 mitochondrial ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1333830]
Mrps28 0.8039814 0.0000148 mitochondrial ribosomal protein S28 [Source:MGI Symbol;Acc:MGI:1913480]
Mrps31 0.9653545 0.0000001 mitochondrial ribosomal protein S31 [Source:MGI Symbol;Acc:MGI:1913153]
Mrps5 0.5141060 0.0004713 mitochondrial ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1924971]
Mrps6 0.5212900 0.0240897 mitochondrial ribosomal protein S6 [Source:MGI Symbol;Acc:MGI:2153111]
Mrrf 0.9586699 0.0000000 mitochondrial ribosome recycling factor [Source:MGI Symbol;Acc:MGI:1915121]
Mss51 -1.4696795 0.0002575 MSS51 mitochondrial translational activator [Source:MGI Symbol;Acc:MGI:1922093]
Msto1 -0.3925561 0.0102490 misato 1, mitochondrial distribution and morphology regulator [Source:MGI Symbol;Acc:MGI:2385175]
mt-Cytb 0.7362155 0.0000633 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
Mtarc2 0.2828941 0.0480976 mitochondrial amidoxime reducing component 2 [Source:MGI Symbol;Acc:MGI:1914497]
Mtch1 -0.9257171 0.0000000 mitochondrial carrier 1 [Source:MGI Symbol;Acc:MGI:1929261]
Mtch2 -0.4261732 0.0011588 mitochondrial carrier 2 [Source:MGI Symbol;Acc:MGI:1929260]
Mterf3 0.9277654 0.0000000 mitochondrial transcription termination factor 3 [Source:MGI Symbol;Acc:MGI:1913660]
Mterf4 0.3820499 0.0347419 mitochondrial transcription termination factor 4 [Source:MGI Symbol;Acc:MGI:1918355]
Mtfmt -0.4597867 0.0045195 mitochondrial methionyl-tRNA formyltransferase [Source:MGI Symbol;Acc:MGI:1916856]
Mtfr1 0.9052520 0.0000000 mitochondrial fission regulator 1 [Source:MGI Symbol;Acc:MGI:1914722]
Mtfr1l 0.8822730 0.0000000 mitochondrial fission regulator 1-like [Source:MGI Symbol;Acc:MGI:1924074]
Mtfr2 -0.8579038 0.0000304 mitochondrial fission regulator 2 [Source:MGI Symbol;Acc:MGI:1919054]
Mtg1 0.7734630 0.0000005 mitochondrial ribosome-associated GTPase 1 [Source:MGI Symbol;Acc:MGI:2685015]
Mtg2 0.8257217 0.0000034 mitochondrial ribosome associated GTPase 2 [Source:MGI Symbol;Acc:MGI:106565]
Mtif2 0.6153472 0.0000148 mitochondrial translational initiation factor 2 [Source:MGI Symbol;Acc:MGI:1924034]
Mtpap 0.5958172 0.0000141 mitochondrial poly(A) polymerase [Source:MGI Symbol;Acc:MGI:1914690]
Mtrf1 0.5078737 0.0431338 mitochondrial translational release factor 1 [Source:MGI Symbol;Acc:MGI:2384815]
Mtrfr 1.0206204 0.0000048 mitochondrial translation release factor in rescue [Source:MGI Symbol;Acc:MGI:1919900]
Mul1 0.3632292 0.0324422 mitochondrial ubiquitin ligase activator of NFKB 1 [Source:MGI Symbol;Acc:MGI:1915600]
Nadk2 -0.8394495 0.0000110 NAD kinase 2, mitochondrial [Source:MGI Symbol;Acc:MGI:1915896]
Ndufa4 -0.9249425 0.0000000 Ndufa4, mitochondrial complex associated [Source:MGI Symbol;Acc:MGI:107686]
Nt5m 0.7314453 0.0000535 5’,3’-nucleotidase, mitochondrial [Source:MGI Symbol;Acc:MGI:1917127]
Oxsm 0.4932018 0.0056981 3-oxoacyl-ACP synthase, mitochondrial [Source:MGI Symbol;Acc:MGI:1918397]
Pck2 0.9288534 0.0000000 phosphoenolpyruvate carboxykinase 2 (mitochondrial) [Source:MGI Symbol;Acc:MGI:1860456]
Polrmt 0.4191897 0.0040463 polymerase (RNA) mitochondrial (DNA directed) [Source:MGI Symbol;Acc:MGI:1915843]
Rars2 1.6012957 0.0000000 arginyl-tRNA synthetase 2, mitochondrial [Source:MGI Symbol;Acc:MGI:1923596]
Shmt2 1.3728711 0.0000000 serine hydroxymethyltransferase 2 (mitochondrial) [Source:MGI Symbol;Acc:MGI:1277989]
Slc25a1 -1.7655179 0.0000000 solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1 [Source:MGI Symbol;Acc:MGI:1345283]
Slc25a10 -1.2352295 0.0000000 solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10 [Source:MGI Symbol;Acc:MGI:1353497]
Slc25a12 0.6561441 0.0000005 solute carrier family 25 (mitochondrial carrier, Aralar), member 12 [Source:MGI Symbol;Acc:MGI:1926080]
Slc25a13 -0.8343217 0.0001822 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13 [Source:MGI Symbol;Acc:MGI:1354721]
Slc25a15 0.8503196 0.0000000 solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15 [Source:MGI Symbol;Acc:MGI:1342274]
Slc25a16 0.5000528 0.0034495 solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16 [Source:MGI Symbol;Acc:MGI:1920382]
Slc25a20 0.7237088 0.0000004 solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20 [Source:MGI Symbol;Acc:MGI:1928738]
Slc25a22 0.5410579 0.0000736 solute carrier family 25 (mitochondrial carrier, glutamate), member 22 [Source:MGI Symbol;Acc:MGI:1915517]
Slc25a23 -1.0869440 0.0000001 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:MGI Symbol;Acc:MGI:1914222]
Slc25a24 0.6281013 0.0000007 solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24 [Source:MGI Symbol;Acc:MGI:1917160]
Slc25a26 0.9033687 0.0005920 solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26 [Source:MGI Symbol;Acc:MGI:1914832]
Slc25a29 -1.2110655 0.0365723 solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29 [Source:MGI Symbol;Acc:MGI:2444911]
Slc25a4 -0.6332772 0.0000000 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 [Source:MGI Symbol;Acc:MGI:1353495]
Slc25a5 -1.5226570 0.0000000 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 [Source:MGI Symbol;Acc:MGI:1353496]
Taco1 0.6846252 0.0024780 translational activator of mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:1917457]
Tefm 0.9472543 0.0000004 transcription elongation factor, mitochondrial [Source:MGI Symbol;Acc:MGI:1915800]
Tfam 0.5264095 0.0000244 transcription factor A, mitochondrial [Source:MGI Symbol;Acc:MGI:107810]
Tfb1m 0.9319333 0.0000001 transcription factor B1, mitochondrial [Source:MGI Symbol;Acc:MGI:2146851]
Timm10 1.1016785 0.0000000 translocase of inner mitochondrial membrane 10 [Source:MGI Symbol;Acc:MGI:1353429]
Timm13 0.5079654 0.0008720 translocase of inner mitochondrial membrane 13 [Source:MGI Symbol;Acc:MGI:1353432]
Timm17a 0.6626551 0.0000404 translocase of inner mitochondrial membrane 17a [Source:MGI Symbol;Acc:MGI:1343131]
Timm21 0.3955789 0.0235638 translocase of inner mitochondrial membrane 21 [Source:MGI Symbol;Acc:MGI:1920595]
Timm22 0.7086218 0.0000015 translocase of inner mitochondrial membrane 22 [Source:MGI Symbol;Acc:MGI:1929742]
Timm23 0.6211246 0.0001260 translocase of inner mitochondrial membrane 23 [Source:MGI Symbol;Acc:MGI:1858317]
Timm29 0.3246959 0.0176516 translocase of inner mitochondrial membrane 29 [Source:MGI Symbol;Acc:MGI:1917023]
Timm44 0.2926062 0.0234966 translocase of inner mitochondrial membrane 44 [Source:MGI Symbol;Acc:MGI:1343262]
Timm50 0.9600814 0.0000000 translocase of inner mitochondrial membrane 50 [Source:MGI Symbol;Acc:MGI:1913775]
Timm8a1 0.6470090 0.0111425 translocase of inner mitochondrial membrane 8A1 [Source:MGI Symbol;Acc:MGI:1353433]
Timm8b -0.5251897 0.0015813 translocase of inner mitochondrial membrane 8B [Source:MGI Symbol;Acc:MGI:1353424]
Timm9 0.6737270 0.0000164 translocase of inner mitochondrial membrane 9 [Source:MGI Symbol;Acc:MGI:1353436]
Tk2 1.0801457 0.0000000 thymidine kinase 2, mitochondrial [Source:MGI Symbol;Acc:MGI:1913266]
Tomm5 0.3920338 0.0479489 translocase of outer mitochondrial membrane 5 [Source:MGI Symbol;Acc:MGI:1915762]
Tsfm 0.3965722 0.0170216 Ts translation elongation factor, mitochondrial [Source:MGI Symbol;Acc:MGI:1913649]
Tst -1.7642216 0.0024784 thiosulfate sulfurtransferase, mitochondrial [Source:MGI Symbol;Acc:MGI:98852]
Tusc2 1.3741976 0.0000000 tumor suppressor 2, mitochondrial calcium regulator [Source:MGI Symbol;Acc:MGI:1931086]
Ucp2 -0.8738500 0.0000000 uncoupling protein 2 (mitochondrial, proton carrier) [Source:MGI Symbol;Acc:MGI:109354]
Vars2 -0.4418199 0.0034171 valyl-tRNA synthetase 2, mitochondrial [Source:MGI Symbol;Acc:MGI:1916165]
Xpnpep3 0.8425571 0.0000000 X-prolyl aminopeptidase 3, mitochondrial [Source:MGI Symbol;Acc:MGI:2445217]
Yars2 0.4734760 0.0084785 tyrosyl-tRNA synthetase 2 (mitochondrial) [Source:MGI Symbol;Acc:MGI:1917370]